Sphingobacterium sp. 21: Sph21_2578
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Entry
Sph21_2578 CDS
T01450
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sph21_2578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shg03400
]
Sph21_2578
Enzymes [BR:
shg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sph21_2578
DNA repair and recombination proteins [BR:
shg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sph21_2578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
TGT_C1
Ripply
Motif
Other DBs
NCBI-ProteinID:
ADZ79129
UniProt:
F4CFH6
LinkDB
All DBs
Position
complement(3177547..3180264)
Genome browser
AA seq
905 aa
AA seq
DB search
MPLDQYRNKRDFKKTSEPKSGKSPNRKQLTFVVQKHKASRLHYDFRLEMDGVLKSWAVPK
GPSTDPQNKRLAMMVEDHPMDYRQFEGIIPKGQYGGGTVIVWDEGTYEPIEGLKSKKAQE
KHLLEQLHKGSLKIRLHGHKLKGEYALVKTQGMGENGWLLIKHKDEFASKSDITKKDKSV
LSDKALEEIEKSSNKVWQNGREKTVEKSRKTTQAKKSKNADEHLADDVNEAGEPQKMDVP
SLLKKAPESTIPKSIKPMKATLIDEPFDDPDWLYEVKWDGYRAIAKVSKTDVKLISRNNI
PFDKYYPLVDLLKGWRINAVIDGEIVVLDEKGLSDFGALQNWRSEADGNLVYYVFDILWY
EGKNLMGLPLVERQAILQDILPTDDDRIRQSKVFAARGIDFFDAAEQVGLEGIIAKKADS
KYTSDLRSKEWLKIKVQRRQEVVIAGFTRNEGTSKAFSALVMGVYDGKKLRYAGKVGTGF
SDSKQKEMMKLFKPLITDRSPFDVEPDVDKPSRFRPQRLGAKPTWLKPELVCEVNYAEVT
SEGIFRQASFKGMREDKEADDVVLEKAADTESTVAEVEEEDKGTKHAIKPAKTERRTLLN
PREETQTRKVNGKELKFTHLSKVYWPDDGITKRDMFNYYYRIAEFILPYLKDRPMSLNRF
PNGIKGPSFYQKDVKGKVPEWVSKTYPYTTSEGEHKEYLVGDDEATLLWMASLGCIEMNP
WFSRVQSPDNPDYCVIDLDPDKNTFEQVIEAAQEVRKVLDALGVSSYPKTSGSTGIHIYI
PLGAKYSYEQSQLFAKVIVSLVHEQLPDFTSLKRKVSDRKGKMYLDFLQNRPGATIAGPY
SLRPKPGATVSMPLAWDEVKRGLKMSDFTIHNAYDRLKETGDLFKGVLGKGIELNKIIKK
AQNDL
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttgatcaataccgtaacaaacgagattttaaaaagaccagtgaaccgaagtca
ggtaagagtccgaaccggaaacaactcacttttgtggtgcaaaaacacaaagcatcgcga
ttacattacgactttcgcttagaaatggatggggtgctgaaaagctgggctgtgcctaaa
ggcccatccactgatccgcagaacaagcgtttggcgatgatggtggaagatcatcccatg
gactatcggcagtttgaggggattatccctaaaggacaatatggcggcggtacggtaatt
gtttgggacgaaggcacctatgaaccaatagaaggactgaagagtaagaaggcacaagaa
aaacatttattggagcagcttcataaagggtcactcaaaatccggctacatggacataaa
ctaaaaggcgaatatgcgctggtaaaaacacaagggatgggtgaaaacggctggctcctt
atcaaacacaaagacgaatttgccagtaaatctgatatcactaaaaaagacaagtcggtg
ctttctgacaaagcattggaagagattgaaaaaagcagcaataaggtatggcaaaacggc
cgtgagaaaaccgttgaaaagtctagaaagaccacacaagcaaaaaaaagcaaaaatgct
gatgaacacttggcggatgatgtaaatgaagccggagagccgcagaagatggatgtaccc
agcttgctaaaaaaagcaccggaatccactattccgaaatcaatcaaaccgatgaaggct
acccttattgacgaaccttttgatgatccggattggctatacgaagtaaaatgggatggt
tatcgtgccattgccaaggtcagtaagacagatgttaaactaatttctcggaataatatt
cctttcgataaatactatccgcttgtcgaccttttgaaaggatggcgtatcaatgccgta
attgatggagaaattgttgtgctagatgaaaaagggctgtccgactttggggccttacag
aattggcgaagcgaagccgatggcaacttggtttattacgtttttgacattttatggtat
gagggcaaaaacctgatgggattgccattggtagaacggcaggcaatccttcaggacata
ttacctactgatgatgaccgtatccgccaaagtaaggttttcgccgcaagggggatcgac
ttttttgacgcggcagagcaggtcgggcttgaaggtattatagcaaaaaaagctgatagt
aagtacacctctgaccttcgatcgaaagagtggcttaagatcaaagtgcaacggcgacaa
gaagtagtgatcgctgggtttacgcgtaatgagggaacgtccaaagcgttcagtgccctc
gtcatgggggtgtatgacggaaagaaacttcgatatgcgggtaaagtgggcaccggtttt
tcggacagcaagcagaaggaaatgatgaagctattcaaaccgctgatcaccgacagaagt
cccttcgatgtagaacctgacgtggacaagccatcccgttttcgtccacaacgactcggc
gcaaaacctacatggctgaaaccggaactggtatgcgaagtgaattacgccgaagttacc
agcgaaggaattttccggcaggcatctttcaaaggtatgcgggaggacaaagaagccgat
gatgtcgtattggagaaagcggctgacacagaatccaccgtggccgaggtggaagaagaa
gacaaggggactaaacatgcaatcaagcccgctaaaaccgaaaggcgtaccctcttgaac
ccacgtgaagagacgcaaacacgtaaagttaatggtaaagaattgaaatttacgcatctc
agcaaggtctattggccggatgacggcattaccaaacgagacatgttcaactattattac
agaatagccgaatttatcttaccctacttgaaagatcgtccgatgtctctgaaccgcttc
ccaaatggcattaaaggtccaagcttttatcaaaaagatgtgaagggaaaagtgccggaa
tgggtaagcaaaacttacccatacaccaccagcgagggtgaacataaagaatacctggtt
ggcgacgatgaagcaaccttgctatggatggcgtcattaggctgtattgagatgaatcct
tggtttagcagagtgcagtcgcccgataatccggattattgcgtgatcgatctggatcct
gataaaaacaccttcgagcaggtcatcgaagccgctcaggaagtgaggaaggtattggac
gctttaggcgtatcgagctatcctaaaacatcagggtccaccggtattcatatttacatc
ccattgggagcgaaatactcttatgagcaatcgcagctttttgcaaaggtcatcgtcagt
ctggtacacgagcaactacccgatttcacatccttaaaacgaaaagtaagtgatcgaaaa
ggaaagatgtatctagacttcttgcaaaaccggcccggagctactatagctggcccctac
tccctacgaccaaagccgggagcaaccgtctcgatgccacttgcctgggacgaagtgaaa
cgtggtttaaaaatgagcgactttactattcacaatgcttatgatcggttgaaagagact
ggtgatctcttcaaaggagtacttggaaagggaatagaacttaataaaatcataaaaaag
gcgcagaacgatttgtaa
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