Shewanella halifaxensis: Shal_2500
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Entry
Shal_2500 CDS
T00654
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
Organism
shl
Shewanella halifaxensis
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
VpsR
HTH_8
AAA
AAA_16
Mg_chelatase
HTH_28
AAA_2
HTH_29
HTH_23
HTH_30
HTH_7
AAA_5
HTH_17
Mga
AAA_22
RWP-RK
ATPase
Motif
Other DBs
NCBI-ProteinID:
ABZ77057
UniProt:
B0TK38
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Position
3011994..3013364
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AA seq
456 aa
AA seq
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MNKFQKKKPIACREILVLDLTGEFFFCAKERKPFRWHCILADTLASANKAVQDYNFFVAI
AVLSKKTQHRVLNSVNEINQRQQNIIWIAVLIDIDAVDAALISRLPYYFTDYHHLPIDWD
HLNQTLGHAYGMAILKQKEQGGCRHLGQKTPFLGDSHLINKLRSNITKVAASDEAVLISG
ETGTGKGLCARLIHSQSARKRGPFITINCGALPQSLIHSELFGHEKGAFTGADKQYIGHI
ERANKGTLFLDEIGDLTLESQVNLLQFLEEHIIERLGGNKTINIDCRIIFASHINLETAV
EEGRFREDLYYRINILHLHAPSLREHKEDILLLANEYLNLFSPEYQKYTLSPKALDIMLA
YEWPGNVRELKNRIHRGIIMANSDQLSAADLGIKITNIKPDENDVVDLAQHRVVIDTELL
LDAIKRNNHNISAAARELKISRTTFYRLIKKCKIKL
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaattccaaaagaaaaaacccattgcttgtagagagatccttgtgcttgacctt
actggtgagttttttttctgtgcaaaagagcgcaaaccgtttcgttggcactgcatcctt
gccgataccctcgcgagtgcaaataaagcagtgcaagattataattttttcgttgccatt
gcagtgctatctaaaaaaactcagcatcgggtgctcaacagcgtcaatgagataaaccag
cgtcaacagaacattatttggatagcggttttaatcgatatcgatgcggtagatgcagca
ctcatatcacgcctaccctactattttaccgactaccaccatcttcccatcgactgggac
cacctcaaccaaacattgggtcatgcttatggcatggcaatcttgaagcaaaaggagcaa
ggaggttgccgtcatcttggtcagaaaacaccgtttttgggtgactctcatttgatcaat
aaactaagaagtaacattaccaaggttgccgcatcggacgaggcagtattgatcagcggt
gaaacaggcacggggaaaggcctatgtgctcgtcttatccatagccagtcagcccgaaaa
agaggccctttcatcaccatcaactgtggcgccctgccacaaagcttgatccattctgag
ctatttggtcacgaaaaaggcgcctttactggcgcagataaacaatacataggccatata
gagagagccaataaaggcacactatttctagatgaaataggtgatcttacgttagagtct
caagtgaacctgttacaatttctcgaagagcatatcatcgagcgtctcggtggcaataaa
accatcaacattgattgccggatcatcttcgcctctcatattaatcttgaaaccgctgtc
gaagaggggcgatttcgtgaagatctctattatcgcatcaatatactgcacctacacgcg
ccgagtcttagagagcataaagaagatattttactgctcgcgaatgagtaccttaatctg
ttcagtcccgaatatcaaaagtataccctttcccccaaagcgctggatatcatgctcgct
tatgaatggccaggcaatgtaagagagctcaagaaccgcatacatcgcggcattatcatg
gcaaatagcgatcaattaagcgcagcggatttaggcataaaaatcaccaatattaagccg
gatgaaaacgatgtggttgatcttgctcagcacagagtggtgatcgataccgagctgcta
ctcgatgccatcaagcgtaataaccacaatatctctgctgcggcgcgtgagctcaagatc
tccagaaccaccttttaccgtctgattaagaaatgcaaaattaaactctag
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