Shewanella sp. ANA-3: Shewana3_2385
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Entry
Shewana3_2385 CDS
T00428
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
shn
Shewanella sp. ANA-3
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shn03016
]
Shewana3_2385
Enzymes [BR:
shn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Shewana3_2385
Transfer RNA biogenesis [BR:
shn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Shewana3_2385
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABK48614
UniProt:
A0KXU5
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All DBs
Position
complement(2863731..2864897)
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AA seq
388 aa
AA seq
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MSRLLFLWTVLNPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAK
LGLIQAYDGKTLALIDPVALPDLSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPL
FDSQIAASLCGMGHGLGYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLY
QLYPQLADKLKAQDRLGWLYEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVL
AKWRLEKALARDLALGFVIKDHGLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVM
QTADLSNPPELVDVLALKPGYKSAFKNIKTCLSELCEQHAIPMEMLGSKRHIHEYLQWRW
DKQQGELPTVLSGWRGQIAAESLAKLDV
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgagccggcttttgtttttatggacggtgcttaacccacaggaactggagaagaatttg
tcagtgtttcagtatgtgagcgacgaagcgagcctcaatgccctcgtcgctcaatatcaa
cagagtccgctgctcgtgttagataccgagtttgtgcgcacacgtacctattacgctaag
cttggcctcattcaagcctatgatggcaaaaccttagccttaattgacccggttgcgctg
ccagatctcagtgcattttggtctttgctggataatcccaacatcatcaaactggtgcat
tcgtgcagcgaggacttagaagtcttcgcccactatggtcagcgtcaacctacgcctttg
ttcgatagccaaatcgcagcctctttatgtggcatgggccatggcctaggttatgccaag
ttagtggaaacctgcttaggtgaagtgattgataaaggtgagtcgcgcaccgactggatg
cgccgtcctttgactgaggcgcagctgagctacgccgccaacgatgtgttgtatctgtat
caactctatccgcaactcgccgacaagcttaaggcacaagatcgcttaggctggttgtat
gaagaaggtgaacggatgacagaagggcgcttagcaacgccagatatggatactgcgtac
ctgagagtcaaaaacgcttttcagctcaccgagcatcaattggcttatcttaaagtattg
gctaagtggcgtttagaaaaagccttagcgcgggatttagccttgggctttgtgattaag
gatcacggcctgatcgcgctagcgaaaaagcagccaaagagcatgggcgatttgctcaaa
ttgaacgatttgaccgagcaagagaaacgcattcacggtaaagatattttacgggtgatg
cagactgcggatttaagcaatccaccagaattagtggatgtcttagcgctaaaaccaggt
tataaatcggcctttaaaaacattaaaacctgcttatctgaactgtgcgagcagcatgcc
atcccgatggagatgctgggctcgaaacgtcatattcatgagtatttacaatggcgttgg
gataaacagcagggtgagttaccgacagtcttaagtggctggcgtggacaaatcgccgcc
gaatcgttggcaaagcttgacgtctaa
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