Sarcophilus harrisii (Tasmanian devil): 100913936
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Entry
100913936 CDS
T02286
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shr03400
]
100913936 (PMS1)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
100913936 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
Methyltrans_RNA
Motif
Other DBs
NCBI-GeneID:
100913936
NCBI-ProteinID:
XP_003764107
Ensembl:
ENSSHAG00000013064
UniProt:
G3WIS0
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All DBs
Position
3:complement(379257834..379364315)
Genome browser
AA seq
938 aa
AA seq
DB search
MKQLPAATIRLLSSSQVITSVISVVKELIENSLDAGATNIDVKLENYGFDKIEVRDNGDG
IKAVDAPVMAIKHYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTKTAADNFSTQ
YALDSSGHIVSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKRCKDELKKIQDLLIAYG
ILKPELRIIFTHNKVTIWQKNRVSDHKTALMAVLGTSMMSNMEAFQHHSEVSQIHLSGFL
PKLDSDHSLTNLSTPERSFIFINNRPVHQKDILKLIRHYYNEKCLKESTRSYPIFFMKIV
VPTADVDVNLTPDKSQVLLQNKESVLIAVENVLTSWYGPLPSTNSRENNKADVSSVDMAV
NRTILTDVHVNKMESSGNSYSNVDISTFSFQHEMQNCESGNNTEVCLKHQITSRDNSHDF
DSENDSTDKANKNTCQDVFINNFSSCKDNQGQHSEMFTLDAPKHIHSTNGSGDRPINELE
KNEEATLSERSFEICADDWSKGSAFKNPFGKNIEPVKICMPPAKDLTSDVNINCNQQNVE
QKSPSKSPNKKKSNVIDDKYGQLTAYDLISNRVIKKPISARALFIQDQRSKFLSENSKTC
VEDMTAEIEELWKTLSEEERMKYEEKAAKDLERYNKQIKKATEQGLQRTLKDSDGKRLKL
TAAQNLAQKQKLKTSFSNQPKLDELFQLQSEKRKNKAQNTKIVQVPFSMKTLKFKYGKYM
KGDFLHKEQLCLIHHLSFPDAWVIGSKTEIMLLNPYRVEEALLFKRLIENHKLPAEPLEN
PVILTESLFNGSQYLEVLNKMTTDDQDFSGSIYFSDPRLTANGFRIKLIPGTSVSENHLE
IEGMANCIPFYGILDLKEILNAVLNKNAKEVYECRPRKVINYLEGEAVRLSRQLPLYLSK
QDVQDTIYRMKQQLGNEIKGCVHGRPFFHHLTHLPKTM
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagttgcctgcagctactattcggctcctttcaagttctcaagtgatcacttct
gtgatcagtgttgtaaaagaactaatagaaaattcattggatgctggtgccacaaatata
gatgttaagctggaaaattatggatttgataaaatagaagttcgagacaatggtgatggg
atcaaagctgttgatgcacctgtgatggcaataaagcactatacttcaaaaataaacagt
catgaagatcttgaaaacttaacaacttatggttttcgtggggaagcgttggggtcaatt
tgttgtatagctgaggttttaattacaacaaagacagctgctgacaacttcagtacccag
tatgctttagatagcagtggtcatatagtttcccaaaagccttcacatcttggacaaggt
acaactgtaactgcattgaaactatttaagaatcttcctgtaagaaaacaattttactca
acagctaaaagatgtaaggatgaattgaaaaaaatccaagatcttcttatagcctatggt
attctcaaacctgaattaaggattatttttacacataacaaggtaactatttggcagaaa
aacagagtttcagatcacaaaacagctttgatggcagtcctgggaactagcatgatgagt
aatatggaggcctttcagcatcactctgaagtatctcagattcatttgagtggatttctt
ccaaagcttgattctgatcattccttgacaaatctttcaactccagaaaggagttttatt
tttataaataatcgaccagtacatcaaaaagacatcttaaagttaattcgacactactac
aatgagaaatgtctaaaagagtcaactcgttcttatccaatcttcttcatgaaaattgtt
gtgcctacagcagatgtggatgtaaatttgactcctgataaaagtcaagtattattacaa
aataaggaatctgttttaattgctgttgaaaatgtgttgacatcatggtatggaccacta
cctagtacaaattctcgtgaaaataataaagcagatgtttcctcagttgacatggctgtt
aacagaacaatactaacagatgtgcatgttaataaaatggaatcatctggaaatagttat
tcaaatgttgatatttcaactttttcattccaacatgaaatgcagaattgtgaatcagga
aataacaccgaggtctgcttaaagcatcagataacttctcgtgataattctcatgatttt
gacagtgaaaatgatagtactgataaagcaaataaaaatacatgtcaggatgtctttata
aataatttttcttcatgtaaggataaccaaggccaacatagtgaaatgtttactctagat
gctccaaagcacattcactctacaaatggtagtggagacagacctattaatgaattggaa
aaaaatgaggaagcaacattatctgaaaggtcttttgaaatctgtgcagatgattggagt
aagggaagtgcatttaaaaatccatttggaaagaacattgaacctgtgaaaatttgtatg
ccaccagcaaaagatttaacatctgatgtaaatataaattgtaatcaacaaaatgttgaa
cagaagagtcccagtaaaagccccaataaaaagaaatcaaatgtgatagatgataaatat
gggcagcttacagcctatgatttaattagcaaccgagtaattaagaaacccatttcagca
agagctctttttattcaagatcagcgttcaaaatttctcagtgaaaattcaaagacctgt
gtagaggatatgacagcagaaattgaagaactgtggaagacattgagtgaagaggaaaga
atgaaatatgaagaaaaagctgctaaagatctagaacgttacaataagcaaatcaagaaa
gctactgagcaggggttacaaagaacactaaaagatagtgatgggaaaagattgaaacta
acagcagcacagaatctggcacagaaacagaagttgaaaacttcattttctaatcagcca
aagcttgatgaactttttcagttgcaaagtgagaaaaggaaaaacaaggcacaaaataca
aaaattgtacaggttcctttttccatgaaaaccttaaaatttaagtatggcaagtatatg
aagggtgactttctgcataaagaacaactttgcctgattcaccatttaagttttcctgat
gcatgggtaattggttccaaaacagagattatgttgttaaatccatacagagtggaagaa
gctttactttttaaaagattaattgagaatcataaacttcctgcagagccattggagaat
ccagtgatattaacagagagtcttttcaatggatcccaatatttagaggtcttaaataaa
atgacaacagatgatcaagacttcagtggttcaatctatttctctgatccacgtcttaca
gcaaatggattcaggataaaattgataccaggaacttcagtttctgaaaaccatctggaa
atagaaggaatggctaattgtatcccattctatggaatattggacttaaaagaaatcctt
aatgcagtgctaaataaaaatgcaaaggaagtttatgaatgtagacctcgtaaagtaata
aattatttagagggagaagcagtgcgtctttctcgacagctacctttatatttatcaaaa
caggatgtacaagatactatctataggatgaagcaacagcttggaaatgaaattaaggga
tgtgttcatggccgcccattttttcatcacttaacacaccttccaaaaactatgtga
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