Sarcophilus harrisii (Tasmanian devil): 100917603
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Entry
100917603 CDS
T02286
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100917603 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shr03400
]
100917603 (LIG3)
Enzymes [BR:
shr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100917603 (LIG3)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100917603 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100917603
NCBI-ProteinID:
XP_031823456
Ensembl:
ENSSHAG00000006134
LinkDB
All DBs
Position
4:complement(429188340..429210235)
Genome browser
AA seq
1003 aa
AA seq
DB search
MPLALAVLFQQTCRAFGQRTVPHLLQDPSRWLLSSQLSSGPFHGFWLLLKKQPCLWFRRG
IPGPCTARFACLPVSHMGFCTGVSEMAEQRYCVDYAKRGTASCKKCKEKIVKGMCRIGKV
VPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELQDPEKDQISELIA
ALSSKAASTPTKRATVQAKLTPTGQVVSPHKGASSVTNTNPRKFSGFAAKPSTSEGPLSN
PPSKTTLSAGKCDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIHDFLQKGSGGDGFHGD
VYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQDDMVRDLEQGDVSETVRVFFEQSR
SFPPAAKSLLTIQEVDEFLLQLSKLTKEDDQQSVLQDIASRCTANDLKCIIRLIKHDLKM
NSGAKHVLDALDPNAYEAFKASRNLQDVVERVLANQQESEKAPGMKRALSVQAALMTPVQ
PMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDQFSYFSRSLKPVLPHKVAHFK
DYIPQAFPGGQSMILDSEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFND
ISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDV
KGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGNKGGMMSIFLMGCYDPSSQK
WCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKINKNYYPDFIVPDPKKAPVW
EITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKKLYQLSKEKADFTVVA
ADEGSSVTSSSSGENEGNMGPSTSRKASKASPNKASGPAKKAERKMNGPPSKAGNKPTMK
PPPGKVEERKGEKRKAPEEGNPSPKKTLLDIFTGVRLYLPPSTQDFSQLRRYFVAYNGDL
VQEYDMASATHVVGSGDKSPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgccattggctttggctgtgctcttccagcagacttgcagagcttttggccaaaggaca
gttccacatttgctccaggacccatcacggtggctgttaagtagccagctctccagtggt
ccctttcatggattctggctccttttgaagaagcagccttgtctctggttcaggcggggc
atcccagggccatgtactgctcgctttgcctgcctacctgtgtcacatatggggttctgc
acaggagtttctgagatggctgaacagcgatactgtgtggactatgccaagcgtggcaca
gccagctgtaagaaatgcaaggaaaaaatagtgaagggcatgtgccgcataggcaaggtg
gtccccaaccccttctcagaatccgggggcgatatgaaagagtggtaccatatcaagtgc
atgtttgagaagctggaacgggcccgggcgaccaccaagaagattgaggacctgactgag
cttgagggctgggaagaacttcaggacccagagaaagatcaaatcagtgagctgattgca
gcactctcctccaaggcagcaagcacaccaaccaagagagccacggtccaggccaagctg
acccccactggccaggtggtttctccacacaaaggagcctcctcagtcacgaacaccaat
ccccggaaattctctggcttcgcagctaagccaagcacctctgagggacccctctcaaac
cctccctccaagaccaccctgtcagctgggaagtgtgacccaaagcacaaggactgcttg
ttgcgggagtttcggaaactctgtgccatggtggctgacaagcccagctacaacgtgaag
acccagatcatccatgactttcttcagaaaggatcgggcggcgatggtttccatggcgat
gtgtacttgacagtgaagctgctcctgccgggggtcattaaaagcgtttataacctgaat
gacaaacagattgtgaagcttttcagtcggatttttaactgcagtcaggatgacatggtc
cgggacttggagcagggagacgtgtccgagacagtgcgcgtgttcttcgagcagagccgg
tccttcccccctgcagccaagagccttctcaccattcaggaagtagacgagttcctactg
cagttgtccaaactcactaaagaggatgaccagcaaagtgtgctgcaggacattgcctcc
aggtgcacagccaatgacctgaagtgcatcatcagactcattaagcatgacctcaagatg
aattcgggtgccaagcatgtgctagatgccctggatccgaatgcctatgaagctttcaag
gcttcgcggaacctccaggatgtggtggaacgtgtcctggcaaaccagcaggagtccgag
aaggcaccgggaatgaaacgggcactcagcgtccaggcagctctcatgacccccgtgcag
cccatgctggctgaagcctgcaaatccattgaatatgcaatgaagaagtgtcccaatggg
atgttctctgagatcaagtatgacggggagcgagtgcaggtgcacaagaagggggatcag
ttcagctacttcagccgaagcctcaagcctgtcctacctcacaaagtggcccattttaag
gactacatccctcaggcattcccagggggccagagcatgatcctagactccgaggtcctt
ctgatcgacaccaaaacaagcaaacctttgccctttgggactctgggtgtgcataagaaa
gcagctttccaggatgccaacgtctgcttatttgtgtttgactgcatctacttcaatgac
atcagcctgatggacagaccattgtgtgaacggcggaagtttctccatgacaacatggtt
gaaatccccaatcggatccttttctctgaaatgaagcacgtcacaaaagcttcagatttg
gctgatatgattaatcgtgtcatccgggaagggctggaaggactggtgctaaaagatgtg
aagggtacttatgagccagggaagcggcactggctaaaagtgaagaaggactacctgaac
gagggggccatggcagacacggcagatctggtggtccttggagccttctatgggcaaggg
aacaaagggggcatgatgtctatcttcctgatgggctgctatgaccccagcagccagaag
tggtgcactgtcaccaagtgcgccggcggccacgacgacgccaccctcgctcgcctgcag
aatgagctggacatggtgaagatcagcaaggatcccagtaagattcccagttggctgaaa
atcaataagaactactaccctgacttcatcgtcccggatccaaagaaagctcctgtttgg
gagatcacaggggcagagttctccaaggccgaggcccacacagccgatggcatctccatc
cgcttcccccgctgcacccgcattcgtgatgataaagattggaagtcggccaccaacctc
ccacagctgaagaagctgtaccagctctccaaggaaaaggccgacttcactgtggtggct
gcagatgaggggagttcggtgactagtagcagcagtggagagaatgagggcaacatgggg
ccttccacctctcgaaaagcctccaaagcctctcccaataaggcctctggcccagccaaa
aaagcagaaagaaagatgaatggccctccgagtaaagcaggcaacaagcccaccatgaaa
cctccccccgggaaagtggaggagaggaaaggggagaaaaggaaggcccccgaggaagga
aacccaagcccaaagaagacgctgctggacatcttcacaggtgtgcggctttacctgccg
ccctccacgcaggatttcagccagctccgccgctacttcgtggcctataatggggatctg
gtccaagaatacgacatggcctctgccactcacgtggtgggcagtggggacaagagccct
gaggcccagcaggtttctcctgaatggatctgggcgtgtatccggaaaaggaggctggtg
gcaccttgctag
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