Sarcophilus harrisii (Tasmanian devil): 100934146
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Entry
100934146 CDS
T02286
Symbol
SOX4
Name
(RefSeq) transcription factor SOX-4
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100934146 (SOX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shr03000
]
100934146 (SOX4)
Transcription factors [BR:
shr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100934146 (SOX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
100934146
NCBI-ProteinID:
XP_031802646
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All DBs
Position
1:complement(539811064..539816287)
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AA seq
504 aa
AA seq
DB search
MVQQTNNAENTEALLAGETSDSGASIELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
ADYPDYKYRPRKKVKSGNASSSSSSTSSSSSSKPGEKGDKVGGGGGGGSGGGSGSSSSSS
SSSGGGGGGGVGGGSSGGGSAGSKPALKKSCGSKLSGGSAGGGAGKPHAKLILGTGGGSS
KPSASSSSSFSPEQAAAAAALLPLGAPADHHSLYKSRTTSTSSTSSSASSSSSSSSSASS
SSSASSLSASSKHLAEKKLKRVYMFGLTSSSPVSGAVPASPSLSGGQENSDTGSLYEESG
AGCPPDGHSLRGSAASSPADSGSPADHRSYTSLRATSPTPSTAHSHSSSSSSSSHSSSSS
SSGSSSSDEEFEDDLLDLNPSPSFESMSLGSFSSTSVLDRDLDFNFEPGSGSHFEFPDYC
TPEVSEMISGDWLESSISNLVFTY
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcagacgaataacgcggagaacacggaagcactcctggccggcgagacctcc
gactccggggccagcatcgagctgggcatcgcctcttccccgacgccaggttccaccgcc
tccaccggcggcaaggcggatgacccaagctggtgcaagacccccagcgggcacatcaaa
cggcccatgaacgctttcatggtgtggtcgcagatcgagaggcgaaagatcatggagcag
tccccagacatgcacaacgccgagatctccaagcggctggggaagcgatggaagttactc
aaggacagcgacaagatccctttcattcgggaggcggagcggctgcgcctcaagcacatg
gcagactacccagactacaagtaccggcccaggaagaaggtgaaatcgggtaacgccagc
tccagctcctcctccacctcttcctcgtcctcctccaaacccggggagaaaggagacaag
gtcggcggcggcggcggcggcggcagcggcggcggcagcggcagtagcagcagcagcagc
agcagctcgggaggcgggggaggcggcggcgtcggcggcggcagcagcggcggcggcagc
gccggctccaaacccgcgctgaaaaagagctgcggctccaagctgtccggaggcagcgcg
ggtggcggggccggcaaacctcacgccaagctgatcctcggcaccggcggcgggagcagc
aaaccctctgcctcctcctcgtcctccttctcccccgagcaggcggctgcggccgcagcc
ctgctccccctgggcgcccccgccgaccaccactcgctctacaagtctcggactaccagc
acctcttccacttcttcctcggcttcctcctcctcctcctcctcgtcttcggcctcctcc
tcgtcttcggcctcctccctctcggcctccagcaaacacctggcggagaagaagctgaag
cgcgtgtacatgttcggcctcacctcctcgtcccccgtgagcggggccgtgcccgccagc
cccagcctgagcgggggccaggagaacagcgacacgggcagcctgtacgaggagagcgga
gcgggctgcccgcccgacgggcacagcctccgcggcagtgccgcctcgtcccccgccgac
agcggctccccggctgatcaccgcagctacaccagcttgcgggccacgtcgcccactccc
tccaccgcgcactcccactcctcctcctcatcctcttcctcccactcctcctcttcgtcc
tcctcgggctcctcttcctcggatgaggagtttgaggacgacctgctcgacctgaacccc
agcccaagttttgagagcatgtctctgggcagcttcagctccacctccgtgctggaccgg
gacctggattttaacttcgagcccggctcgggctcacattttgaattcccggactactgc
acgccggaggtaagtgagatgatctcgggggattggctagagtccagcatctccaacctg
gtcttcacttactga
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