KEGG   Sphingobacterium sp. ML3W: KO02_10895
Entry
KO02_10895        CDS       T03258                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sht  Sphingobacterium sp. ML3W
Pathway
sht03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sht00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KO02_10895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sht03400]
    KO02_10895
Enzymes [BR:sht01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KO02_10895
DNA repair and recombination proteins [BR:sht03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KO02_10895
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AIM37138
UniProt: A0A088EYC0
LinkDB
Position
2470841..2473330
AA seq 829 aa
MDNLKAYRDKRDFKKTREPHGAKSKHKTERLRFVVQRHHASHLHYDFRLELDGVLKSWAV
PKGPSLNPTDKRLAVQVEDHPIDYASFEGSIPKGHYGAGQVYIFDAGYYDFLEDANTSEF
STKLEKGSIKFVLHGHVLKGEFALVRMQDGKNKNWLLIKHRDKYALDGPFDIEDFVDDKI
KKISRAIETDGEHINRRRDKRDKKKLVEHAGTEKQDLMKVKLIEKVPQEQGWVFERKYDG
YRIVATRDKSNIEVMSRNGINMSPLFPSLVTCLQQAVVQRFQLDGELILEDVRGKSFFQS
LQKGEPFRGGLTLKYIAFDLLELDGNDLTGFPLIERRALLELFLKKNKFSMVLPAEILDG
KPNELLAYAEEKGWEGVVGKLTSSSYQRGRRSGDWVKIKVRKNLEALVCGFSKPSGSRAY
FGALILGYYEEGRLIYLGNCGTGFTDADLKEIYELVEKFKVNDKPFAPTIMVAKEKEVSW
LDPQLVVSVSYNDWTQDRRLRHAVFKGIRTDKTRDNINFEEIRATLPPERIQEEMIIDGN
LVQLSNLNKIYWPDEGYTKGQMLTYYDEFADYMLPFLHDKPISLNRFPNGIASKSFFQKD
VLPKNLPSWLETSIIFSESSNRDVHYLICNNRESLLYIANLGSIEINPWLSTYQKPEMPT
FAVLDLDPNGMDFQEVIRVALTVSELLRQIKVEGYVKTSGSTGLHIYFYLQEYYNYEVAR
NFVEWLATSVHQQHPQTTSMERNVNKRKGLIYLDFMQNRRGQTVAAPYAIRPKKGATIST
PLDWEEVNAKLTIAHYDIRSVPIRLRNMIDPWQSIWNNPIDLKSVLAAL
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggataatttaaaagcatatcgggataaacgtgattttaagaaaactagggagccgcat
ggagcaaaaagcaaacataaaacagaacgattacgttttgtggttcagcggcatcatgca
agtcatctgcattatgatttccgcttagagttggatggggttttaaaaagttgggctgtg
cctaaaggaccttcgctaaatcccactgataaacgattggcagtgcaagtggaggatcac
ccgattgattatgcttcttttgagggtagtattccgaaaggtcattatggtgctggacag
gtatacatttttgatgcggggtattatgattttttggaggatgctaatacaagtgagttt
agcacaaaattagaaaaagggtctattaaattcgtattacacggacatgttttaaaaggt
gaatttgcattggttagaatgcaagatggtaagaataaaaactggctattaattaagcat
cgggacaagtatgctttggatggaccatttgatattgaagattttgtagatgataaaatc
aagaaaatcagtcgggctattgaaactgatggtgaacatataaatagaaggcgggataaa
agagataagaaaaaattggttgaacatgcagggactgaaaaacaagatttaatgaaggtc
aaactaattgaaaaagtgccgcaggagcagggttgggtgtttgagaggaaatatgatggt
tatcgcatagtcgccactagagataagagtaatattgaggttatgtctcgtaatggcatt
aatatgagtcctttatttcccagcttagtcacctgcttgcagcaggctgtagtgcagcgt
ttccaattggatggggaattgatattggaagatgtaagaggtaagtcattctttcagtct
ttacagaaaggggagccttttaggggaggattaaccttaaaatatattgcttttgattta
ttggagctggatgggaatgacctaacaggttttcctctaatagagaggagagcgctttta
gaactgtttttaaaaaagaataagttttcgatggtccttcctgcggagatacttgacggt
aaaccaaatgagttattggcctatgctgaggaaaagggttgggaaggtgttgtcggtaaa
ttgacaagcagtagttatcagagaggtagacggtccggagactgggtaaaaatcaaggta
agaaaaaatttggaggctttggtttgtggtttctccaagccttcgggtagccgtgcttat
ttcggtgcgctgattcttggctattacgaagagggacgtttaatctatttgggtaattgc
ggtacaggttttacggatgccgatttaaaggaaatctatgagcttgttgaaaaattcaaa
gttaatgataaaccttttgcaccgacgataatggtggcaaaagaaaaagaggtcagttgg
ttggatccgcaattggtggtttcagtatcttataatgattggactcaagacaggcgcctg
aggcatgcggtctttaagggtattagaacggataaaacacgtgataatatcaactttgag
gaaataagagcaacacttccgcctgagcgtatacaagaagaaatgataattgatgggaac
cttgtccaattgagtaacctaaataaaatctattggcccgatgaaggttataccaaaggt
caaatgttgacatattatgatgaatttgcagattatatgttaccttttttgcacgataag
ccaatttcattaaatcgctttcccaatggtattgcaagcaaaagtttctttcaaaaagat
gtgctccccaaaaatttgccaagttggttagagaccagtattattttttctgaaagcagt
aatcgtgatgtacattatttgatttgtaataatcgagaatccctgctttatatagccaat
ttgggttctattgaaattaatccctggttatcgacatatcaaaagccagaaatgccaact
tttgcggtgttggatttagatcctaatggaatggattttcaggaggtcatacgtgtagcg
ttgacggtgagtgaattgctgaggcaaattaaggtcgaagggtatgtgaagacgtcggga
tctacgggtttacatatttatttttaccttcaggaatactacaactatgaagttgcgcga
aattttgtggagtggttagctacctctgttcaccaacaacacccacaaactacgagcatg
gaaaggaatgtgaacaagcggaaaggattaatctatttggattttatgcaaaatagaaga
gggcaaaccgtagcagcaccttatgctatacgcccaaaaaaaggagcaaccatcagcact
ccattagattgggaagaagttaatgcaaagttgacgattgcccattacgatattcgcagt
gtgcccattcgtttgcgaaatatgattgatccatggcaatcgatatggaataaccccatc
gatttaaaaagtgtactggcagcactctag

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