Sphingobacterium sp. ML3W: KO02_10895
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Entry
KO02_10895 CDS
T03258
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KO02_10895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sht03400
]
KO02_10895
Enzymes [BR:
sht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KO02_10895
DNA repair and recombination proteins [BR:
sht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KO02_10895
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIM37138
UniProt:
A0A088EYC0
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All DBs
Position
2470841..2473330
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AA seq
829 aa
AA seq
DB search
MDNLKAYRDKRDFKKTREPHGAKSKHKTERLRFVVQRHHASHLHYDFRLELDGVLKSWAV
PKGPSLNPTDKRLAVQVEDHPIDYASFEGSIPKGHYGAGQVYIFDAGYYDFLEDANTSEF
STKLEKGSIKFVLHGHVLKGEFALVRMQDGKNKNWLLIKHRDKYALDGPFDIEDFVDDKI
KKISRAIETDGEHINRRRDKRDKKKLVEHAGTEKQDLMKVKLIEKVPQEQGWVFERKYDG
YRIVATRDKSNIEVMSRNGINMSPLFPSLVTCLQQAVVQRFQLDGELILEDVRGKSFFQS
LQKGEPFRGGLTLKYIAFDLLELDGNDLTGFPLIERRALLELFLKKNKFSMVLPAEILDG
KPNELLAYAEEKGWEGVVGKLTSSSYQRGRRSGDWVKIKVRKNLEALVCGFSKPSGSRAY
FGALILGYYEEGRLIYLGNCGTGFTDADLKEIYELVEKFKVNDKPFAPTIMVAKEKEVSW
LDPQLVVSVSYNDWTQDRRLRHAVFKGIRTDKTRDNINFEEIRATLPPERIQEEMIIDGN
LVQLSNLNKIYWPDEGYTKGQMLTYYDEFADYMLPFLHDKPISLNRFPNGIASKSFFQKD
VLPKNLPSWLETSIIFSESSNRDVHYLICNNRESLLYIANLGSIEINPWLSTYQKPEMPT
FAVLDLDPNGMDFQEVIRVALTVSELLRQIKVEGYVKTSGSTGLHIYFYLQEYYNYEVAR
NFVEWLATSVHQQHPQTTSMERNVNKRKGLIYLDFMQNRRGQTVAAPYAIRPKKGATIST
PLDWEEVNAKLTIAHYDIRSVPIRLRNMIDPWQSIWNNPIDLKSVLAAL
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggataatttaaaagcatatcgggataaacgtgattttaagaaaactagggagccgcat
ggagcaaaaagcaaacataaaacagaacgattacgttttgtggttcagcggcatcatgca
agtcatctgcattatgatttccgcttagagttggatggggttttaaaaagttgggctgtg
cctaaaggaccttcgctaaatcccactgataaacgattggcagtgcaagtggaggatcac
ccgattgattatgcttcttttgagggtagtattccgaaaggtcattatggtgctggacag
gtatacatttttgatgcggggtattatgattttttggaggatgctaatacaagtgagttt
agcacaaaattagaaaaagggtctattaaattcgtattacacggacatgttttaaaaggt
gaatttgcattggttagaatgcaagatggtaagaataaaaactggctattaattaagcat
cgggacaagtatgctttggatggaccatttgatattgaagattttgtagatgataaaatc
aagaaaatcagtcgggctattgaaactgatggtgaacatataaatagaaggcgggataaa
agagataagaaaaaattggttgaacatgcagggactgaaaaacaagatttaatgaaggtc
aaactaattgaaaaagtgccgcaggagcagggttgggtgtttgagaggaaatatgatggt
tatcgcatagtcgccactagagataagagtaatattgaggttatgtctcgtaatggcatt
aatatgagtcctttatttcccagcttagtcacctgcttgcagcaggctgtagtgcagcgt
ttccaattggatggggaattgatattggaagatgtaagaggtaagtcattctttcagtct
ttacagaaaggggagccttttaggggaggattaaccttaaaatatattgcttttgattta
ttggagctggatgggaatgacctaacaggttttcctctaatagagaggagagcgctttta
gaactgtttttaaaaaagaataagttttcgatggtccttcctgcggagatacttgacggt
aaaccaaatgagttattggcctatgctgaggaaaagggttgggaaggtgttgtcggtaaa
ttgacaagcagtagttatcagagaggtagacggtccggagactgggtaaaaatcaaggta
agaaaaaatttggaggctttggtttgtggtttctccaagccttcgggtagccgtgcttat
ttcggtgcgctgattcttggctattacgaagagggacgtttaatctatttgggtaattgc
ggtacaggttttacggatgccgatttaaaggaaatctatgagcttgttgaaaaattcaaa
gttaatgataaaccttttgcaccgacgataatggtggcaaaagaaaaagaggtcagttgg
ttggatccgcaattggtggtttcagtatcttataatgattggactcaagacaggcgcctg
aggcatgcggtctttaagggtattagaacggataaaacacgtgataatatcaactttgag
gaaataagagcaacacttccgcctgagcgtatacaagaagaaatgataattgatgggaac
cttgtccaattgagtaacctaaataaaatctattggcccgatgaaggttataccaaaggt
caaatgttgacatattatgatgaatttgcagattatatgttaccttttttgcacgataag
ccaatttcattaaatcgctttcccaatggtattgcaagcaaaagtttctttcaaaaagat
gtgctccccaaaaatttgccaagttggttagagaccagtattattttttctgaaagcagt
aatcgtgatgtacattatttgatttgtaataatcgagaatccctgctttatatagccaat
ttgggttctattgaaattaatccctggttatcgacatatcaaaagccagaaatgccaact
tttgcggtgttggatttagatcctaatggaatggattttcaggaggtcatacgtgtagcg
ttgacggtgagtgaattgctgaggcaaattaaggtcgaagggtatgtgaagacgtcggga
tctacgggtttacatatttatttttaccttcaggaatactacaactatgaagttgcgcga
aattttgtggagtggttagctacctctgttcaccaacaacacccacaaactacgagcatg
gaaaggaatgtgaacaagcggaaaggattaatctatttggattttatgcaaaatagaaga
gggcaaaccgtagcagcaccttatgctatacgcccaaaaaaaggagcaaccatcagcact
ccattagattgggaagaagttaatgcaaagttgacgattgcccattacgatattcgcagt
gtgcccattcgtttgcgaaatatgattgatccatggcaatcgatatggaataaccccatc
gatttaaaaagtgtactggcagcactctag
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