Schistosoma haematobium (urinary blood fluke): MS3_00001971
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Entry
MS3_00001971 CDS
T05004
Symbol
LIG4_1
Name
(RefSeq) DNA ligase (ATP), variant 2
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MS3_00001971 (LIG4_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00001971 (LIG4_1)
Enzymes [BR:
shx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MS3_00001971 (LIG4_1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
MS3_00001971 (LIG4_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
24594491
NCBI-ProteinID:
XP_051074965
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All DBs
Position
1:69019521..69041562
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AA seq
575 aa
AA seq
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MDVIFESSRIAKNVSFTTYCRLLEKLASSDGVKTKEKILSKFIILWETQYLALDSISQYP
CGGRASLYLLLRLLIPSHDRSRKAFGLREQTLSRLIIKAIGLAPNSLAARKLSHIHPNII
HRQTDFADVAYTVLKARSREDSVLSVKDLNAHLDDLTTAESYQMRLQVLRSLLQLTTALE
QKWIIRLIVKRDSGCGLSGKSILKCFHPAAVSVFEVTQDLLPLCERIANIPSSNISMLTG
LANDLSNSINVTLFVPFRPMLCERANSGDMLVNAALHLYGKQNQGDTKGLKLLFETKFDG
ERVQLHKSSNSYRYWSRNRLEWTASYGEDGTRDFDRLSAQLHCGFAQHVTDCILDGEMMI
FSNWSKSIMSKSTKFDVKRSSYQNPEIDNYQPCFIVFDILYLNSQLLTSKSLLERKHLLS
EAFNLNSTSLDTDLFMDSDESLDFKPIPIIDGIIYVSKWYTASAHQTEVARAFNHLVNDH
QEGLIVKIADSPSPYLPGIRTDSGWWKIKPDYIQGLLEDLDCIIVGGYFHHRGNKIITRV
NHFLCAVRGDESTSEDNFNLTRFYTFCKVFNIFRG
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgattttcgaaagttcacgtattgcaaaaaatgtttcattcacaacttattgc
cgtctattagaaaagctagcatcaagtgatggggtcaagacgaaagaaaaaattttgtcc
aaatttataattttatgggagacccagtatcttgcattagactcaataagtcagtatccg
tgtggtggtcgagctagtctttacttactcttacgtttgttgattccttctcatgataga
tcaaggaaagctttcggattacgtgaacaaacactatcaagactaataattaaagctatt
gggcttgccccaaacagtctggctgctcgtaaactttcacatattcatcctaatattatc
catcgacagactgattttgccgatgtagcatatacagtgctcaaagctcgaagtcgtgag
gacagtgttttgtctgtcaaggatctgaatgctcatttagacgacctgactactgctgag
tcatatcagatgcgtttacaagtattgagatcgttgttacagttaactacagctttagaa
caaaaatggattatacgtcttattgtcaaacgagattctggttgtggcctaagcgggaag
agtattctcaaatgctttcatccagctgcggtctctgttttcgaagtcacacaagatctt
ctcccgctatgtgaacgaattgcaaatataccttcttccaacatatctatgttgacagga
cttgctaacgatctaagcaactcaatcaatgtcactctttttgttccatttcgtcccatg
ttatgcgagcgggctaacagtggtgatatgctagttaacgcagcactacatttgtacggt
aaacagaaccaaggtgatactaaaggattaaaacttcttttcgaaacgaaattcgatgga
gaacgagttcaacttcataaatcaagtaattcttatcgatattggtcaagaaatcgttta
gaatggacagcaagctacggtgaagatggtactcgagattttgacagattatctgctcaa
ttacattgtggatttgcacagcatgtaactgattgcatactagatggagaaatgatgata
tttagtaattggtcaaagtcaattatgtcaaaatcaacaaaattcgatgtaaaacgaagt
tcttatcaaaatccagaaatcgataattatcaaccgtgtttcattgttttcgatatactt
tatttgaattcacaattattaacttcaaagtccttactggagcgtaaacatcttctatca
gaggcatttaatttgaattccacatcattggatactgacttgtttatggatagtgatgaa
tcattagatttcaaaccaatccctattatagatggtattatatacgtttccaaatggtat
actgcctcagcacatcaaacagaagttgcaagagcttttaatcatcttgtgaatgatcat
caagagggtcttatagtgaaaatagctgattctccatctccttatctgcctggtattaga
actgatagtggctggtggaaaattaaaccagattatatacagggtttattagaagactta
gattgtataattgtcggtggttattttcatcatcgtgggaataagataataacaagagtt
aaccattttttatgtgctgttcggggtgatgaatctacttcagaagataatttcaatcta
acacggttttatacattttgcaaggttttcaatatttttcgtggttag
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