Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6417
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Entry
SHJG_6417 CDS
T02063
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SHJG_6417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_6417
Enzymes [BR:
shy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SHJG_6417
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SHJG_6417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AEY91684
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All DBs
Position
complement(7300376..7301245)
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AA seq
289 aa
AA seq
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MEGRRVALSNLEKVLYPETGFTKGELLHYYATTATALLPHLRDRAVSFLRYPDGPEGQLF
FTKNVPPGTPEWVTTAEVPRSSADSPARMVVVQDLPSLVWAANLVTEFHTHQWLVRSPQE
ADRLVFDLDPGAPATVVHCCEVALWLRERLAADGIVAYPKTAGSKGLHLLAAVRGSSSEG
TSDYAKALAVEAERAMPRLVVHRMTKSLRPGKVFVDWSQNAARKTTATPYTVRARRLPLV
SAPVTWEEVADCRSPGQLEIHAEDMAPRLQDHGDLMEPLLDRRSAAPLP
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtggaggggcgccgggtcgcgctcagcaacctggagaaggtgctgtatccggagaccggc
ttcaccaaaggggagctgctgcactactacgcgaccaccgccacggccctgctgccgcac
ctgcgcgaccgggcggtgtccttcctgcgctatccggacgggcccgaagggcagctcttc
ttcacgaagaacgtgccgccgggtacgcccgagtgggtcaccacggccgaggtgccgcgg
tcgtcggcggacagcccggcccggatggtcgtggtgcaggacctgccgagcctggtctgg
gcggcgaacctcgtcaccgagttccacacccaccagtggctggtgcggtccccgcaggag
gcggaccggctggtcttcgacctcgatccgggcgcgcccgcgacggtcgtgcactgctgc
gaggtcgccctgtggctgcgggagcggctcgcggcggacgggatcgtggcgtacccgaag
accgcggggtcgaaggggctgcatctgctggcggcggtgcgcgggagttcttccgagggg
acgtccgattacgcgaaggcgctggcggtggaggccgagcgggcgatgccccggctggtg
gtgcaccggatgacgaagagcctgcggccggggaaggtgttcgtcgactggagccagaac
gctgcgcgcaagaccacggccaccccgtacaccgtgcgcgcccgccgcctccccctggtg
tccgcgccggtgacctgggaggaggtggccgactgccggagccccgggcagctggagatc
cacgcggaggacatggcgccgcgcttgcaggatcacggggacctgatggagccgttgctg
gaccggcggtcggcggccccgttgccgtaa
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