Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6690
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Entry
SHJG_6690 CDS
T02063
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHJG_6690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_6690
Enzymes [BR:
shy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SHJG_6690
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SHJG_6690
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SHJG_6690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
NFACT_N
DZR
Motif
Other DBs
NCBI-ProteinID:
AEY91957
LinkDB
All DBs
Position
7609958..7610818
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AA seq
286 aa
AA seq
DB search
MPELPEVEVVRRGLERWVAHRTVAETEVLHPRAVRRHVAGADDFAHRLKGHHIGTPRRRG
KYLWLPLEETNQSVLAHLGMSGQLLVQPHETADEKHLRIRVRFADSLGTELRFVDQRTFG
GLSLHDNTPDGLPDVIAHIARDPLDPLFDDEAFHQALRRKRTTIKRALLDQSLISGVGNI
YADEALWRARIHYERPTANFTRPVTAELLGHIRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREGEPCRRCGTPMRRRPWMNRSSYFCPTCQRAPRVSS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagttgcccgaggtcgaagtcgtccgccggggcctggagcgctgggtcgcccac
cggaccgtcgccgagaccgaggtgctgcacccgcgagccgtacgccggcacgtcgccggg
gccgacgacttcgcgcaccggctcaagggccaccacatcggcacgccccggcggcgcggc
aagtacctgtggctgccgctggaggagacgaaccagtccgtcctcgcccacctcggcatg
agcggacagctactggtccagccgcacgagacggcggacgagaagcacctgcgcatccgc
gtgcggttcgccgactccctaggcaccgaactccgcttcgtcgaccagcgcaccttcggc
gggctgtcgttgcacgacaacacccccgacggcctgcccgacgtcatcgcgcacatcgcc
cgcgacccgctggacccgctcttcgacgacgaggccttccaccaggcgctgcgccgcaag
cggaccaccatcaagcgggccctgctggaccagtcgctgatcagcggcgtcggcaacatc
tacgcggacgaggccctgtggcgcgcccgcatccactacgaacgccccacggcgaacttc
acccgcccggtcacggcggaactcctcggtcacatccgggacgtgatgaacgcggccctc
gccgtcggcggcaccagcttcgacagcctgtacgtcaacgtcaacggcgaatccggctac
ttcgaccgttccctggacgcctacggccgggagggcgagccctgccgccgctgcggcacc
cccatgcgccggcgcccctggatgaaccggtccagctacttctgccccacgtgtcagagg
gcgccgcgcgtctcgtcgtaa
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