Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_7456
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Entry
SHJG_7456 CDS
T02063
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SHJG_7456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_7456
Enzymes [BR:
shy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SHJG_7456
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SHJG_7456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
baeRF_family7
Motif
Other DBs
NCBI-ProteinID:
AEY92723
LinkDB
All DBs
Position
8492530..8493465
Genome browser
AA seq
311 aa
AA seq
DB search
MSREDARTLRAGRRSVEIKRPGKVLFPGGGGAKEYTKGDLADYYRSVAPYLLPHLRGRPL
MLERYPDGLDGQRFMQKNTPEHYPEWITRAEVAKEGGTVTHVVCDDTATLLYLADQACLT
LHRWLSRTDRAGGPDHPDRLVFDLDPPGDDFGAVREAAAWLRELLDELGLPAAPMTTGSR
GLHLVVPLDGRQDFDAVREFAHDVAELAAARHPDRLTTAARKQDRGDRLYLDVQRNAYAQ
TAVAPFTVRARPGAPVAVPLTWEQLDDPGLDARRWTIADAVDQARTDPWAGLPARGRSLA
PARRRLADMRS
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgaggacgcgcggaccctgcgcgcgggccgccgctcggtggagatcaagcgg
ccggggaaggtgctcttccccggcggcgggggcgcgaaggagtacaccaagggcgacctc
gccgactactaccggtccgtcgcgccgtacctgctgccgcacctgcggggccgcccgctg
atgctggaacgctatccggacggcctcgacggccagcggttcatgcagaagaacaccccg
gagcactacccggagtggatcacccgggccgaggtcgccaaggagggcgggacggtcacg
cacgtcgtctgcgacgacaccgcgaccctcctgtacctcgccgaccaggcctgcctgacc
ctgcaccgctggctctcgcgcaccgaccgggccggcggcccggaccaccccgaccggctg
gtcttcgacctcgatccccccggggacgacttcggcgccgtccgcgaggccgccgcctgg
ctgcgcgagctgctggacgaactcggcctgcccgccgcgccgatgaccacgggctcgcgc
ggactgcacctcgtcgtcccgctcgacggccgccaggacttcgacgccgtacgggagttc
gcccacgacgtcgccgaactcgccgccgcacggcacccggaccggctcaccaccgccgcc
cgcaaacaggaccgcggtgaccgcctctacctcgacgtgcagcgcaacgcgtacgcccag
accgccgtcgcgcccttcaccgtccgcgcccgccccggcgccccggtcgccgtccccctc
acctgggagcagctcgacgaccccgggctcgacgcccgccgctggaccatcgccgacgcc
gtcgaccaggcccgcaccgacccgtgggccgggctgccggcccgcgggcgctccctggcc
cccgcccggcgccgtctcgccgacatgcgctcctga
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