Ruegeria pomeroyi: SPO0340
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Entry
SPO0340 CDS
T00215
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00010
Glycolysis / Gluconeogenesis
sil00020
Citrate cycle (TCA cycle)
sil00260
Glycine, serine and threonine metabolism
sil00280
Valine, leucine and isoleucine degradation
sil00310
Lysine degradation
sil00380
Tryptophan metabolism
sil00620
Pyruvate metabolism
sil00630
Glyoxylate and dicarboxylate metabolism
sil00640
Propanoate metabolism
sil00785
Lipoic acid metabolism
sil01100
Metabolic pathways
sil01110
Biosynthesis of secondary metabolites
sil01120
Microbial metabolism in diverse environments
sil01200
Carbon metabolism
sil01210
2-Oxocarboxylic acid metabolism
sil01240
Biosynthesis of cofactors
Module
sil_M00009
Citrate cycle (TCA cycle, Krebs cycle)
sil_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sil_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
sil_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SPO0340 (lpdA)
00020 Citrate cycle (TCA cycle)
SPO0340 (lpdA)
00620 Pyruvate metabolism
SPO0340 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
SPO0340 (lpdA)
00640 Propanoate metabolism
SPO0340 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SPO0340 (lpdA)
00280 Valine, leucine and isoleucine degradation
SPO0340 (lpdA)
00310 Lysine degradation
SPO0340 (lpdA)
00380 Tryptophan metabolism
SPO0340 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SPO0340 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sil04147
]
SPO0340 (lpdA)
Enzymes [BR:
sil01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SPO0340 (lpdA)
Exosome [BR:
sil04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SPO0340 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
NAD_binding_8
FAD_oxidored
HI0933_like
FAD_binding_2
GIDA
Thi4
DAO
3HCDH_N
Lys_Orn_oxgnase
FAD_binding_3
AlaDh_PNT_C
UDPG_MGDP_dh_N
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
AAV93660
UniProt:
Q5LXD1
LinkDB
All DBs
Position
complement(351721..353109)
Genome browser
AA seq
462 aa
AA seq
DB search
MATYDVIIIGAGPGGYVCAIRCAQLGLKTAVVEGRETLGGTCLNVGCIPSKALLHASHSL
HEAQHNFAKMGLKGKSPSVDWKQMLAYKDEVIEGNTKGIEFLFKKNKIDWIKGWASIPAA
GKVQVGDDTHEAKNIIIASGSEPASLPGVEVDEKTVVTSTGALELGKIPKSLVVIGAGVI
GLELGSVYARLGAEVTVVEFLDVITPGMDGEVQKTFQRILKKQGLTFVMGAAVQKTEIAR
GKAKVTYKLLKKDTEHEIEADTVLVATGRKPYTAGLGLDKLGIEMTQRGQIKVGKDWQTN
VPGIYAIGDVIEGPMLAHKAEDEGMAAAEQVAGKHGHVNYGVIPGVIYTTPEVANVGATE
ESLKAEGRAYKVGKFMFMGNGRAKANFASDGFVKILADKETDRILGAHIIGPAAGELIHE
VCVAMEFGASAEDLALTCHAHPTYSEAVREAALACGDGPIHS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcaacctatgacgtcatcatcatcggcgcaggccccggcggctatgtctgcgccatc
cgctgcgcccagctgggtttgaaaaccgccgtggtcgagggccgcgaaaccctgggcggc
acctgcctgaacgtgggctgcatcccgtccaaggcgctgctgcacgcctcgcattcgctg
cacgaggcgcaacacaactttgccaagatgggactcaagggcaaaagcccttcggtcgac
tggaagcagatgctcgcctacaaggacgaggtgatcgagggcaataccaagggcatcgaa
ttcctgttcaagaagaacaagatcgactggatcaagggctgggcctcgatccctgccgcg
ggcaaggtgcaggtgggcgacgacacccacgaggcgaagaacatcatcatcgcctccggc
tccgaaccggcctcgttgccgggtgtcgaggtggacgagaagaccgtcgtgacctcgacc
ggcgcgctggaactgggcaagatcccgaaatccctggtggtgatcggcgccggtgtcatc
gggctggaactgggctcggtctatgcccgcctgggtgccgaggtgacggtggtcgagttc
ctcgacgtgatcacccccggcatggacggcgaagtgcaaaagaccttccagcgcatcctg
aaaaagcagggcctgaccttcgtcatgggtgccgcggtgcaaaagaccgaaatcgccagg
ggcaaggccaaggtcacctacaagctgctgaaaaaggacaccgagcacgagatcgaggca
gataccgtgctggttgccaccgggcgcaaaccctatactgcgggtctgggcctcgacaag
ctggggatcgagatgacccagcgcggccagatcaaggtgggcaaggactggcagaccaac
gtgcccggcatctacgccatcggcgacgtgatcgaaggcccgatgctcgcccacaaggcc
gaggacgaggggatggccgccgccgaacaggtcgcgggcaagcatggtcatgtcaactat
ggcgtcattcccggcgtgatctacacaacgcccgaggtcgccaatgtcggcgccaccgag
gaaagcctcaaggccgagggccgcgcctacaaggtcggcaagttcatgttcatgggcaat
ggccgcgccaaggccaatttcgctagtgacggcttcgtcaagatcctcgccgacaaggag
acagaccgcatccttggcgcccatatcatcggcccggcagcgggcgaactgatccacgag
gtctgcgtcgccatggaattcggcgcctcggccgaggatctggcgctgacctgccacgca
cacccgacctattccgaggctgtgcgcgaggcggcgctggcctgcggcgacggcccgatc
cactcgtaa
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