Simplicispira suum: C6571_07475
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Entry
C6571_07475 CDS
T05361
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
simp
Simplicispira suum
Pathway
simp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6571_07475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
simp03400
]
C6571_07475 (ligD)
Enzymes [BR:
simp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6571_07475 (ligD)
DNA repair and recombination proteins [BR:
simp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6571_07475 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVO41146
UniProt:
A0A2S0MZ29
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All DBs
Position
complement(1588967..1591555)
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AA seq
862 aa
AA seq
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MASRNPPEDALTRYREKRNFTRTPEPEGAVEPAAGALRFVIHKHWATRLHYDLRLECEGT
MKSWAVPKGPSLDPREKRMAVQVEDHPISYNSFEGQIPPGQYGAGRVVLWERGHWIPHSD
PVAGLRDGHLKFTLQGEKLHGSWALVRMGGKRFDPKKPAWLLIKERDAEARPADEYDVTE
ALPDSVNTGAAAKAQPAPKAAKQAPSQPERKSTAKISTQSAALGSPLKALPQTLAPQLAT
LANAPPSDGVGWIYELKFDGYRMLARIDARGAVRLFTRSGNDWTDKLASIADAIKALGLR
STWLDGELTATGDNGAPDFQRLQNAFDRAATTDLIYTLFDLPVYAGRDLREEPLLERRAA
LEALVQKDAGETLRFSAAFDARASDLVASACKIGFEGVIGKRADAPYRSGRSSQWIKLKC
SQRQEFVVGGFTEPQGGRSGLGALLLGVHDGKGALLYAGKVGTGFTDDALQRLRAQLEPL
VQKRCPFSAQPADARKAHWLKPTLVAEVAFAEWTQDGRIRHSVFKGLRTDKPAHSIVREQ
ATRPAATTAAQPKGKRPVGAKAPSPALPSSFSITHGERVIDAASGTTKRDLARYYATVAP
LMLEHLAGRPVALVRAPQGVGKETFFQKHGDAERLPGIEALDPQLDPGHGPLLEVVSAVG
LLSAAQMNVIEFHTWNARADRIERPDRITFDLDPGEGVAWPQIQEAAELVRVLLRELGLP
AFLKTSGGKGLHVVVPLKRLRDWDSTKDFSQAVVQHLARAIPQRFVGKSGPRNRVGKIFV
DYLRNGRGATTVSAWSARARPGLGVSVPVAWSELPSIASGAHWTVATIEDRLRLGNGPWT
GYDKAASALGEAMARLDFTPSA
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggccagccgaaatccgcctgaagacgcactgacgcgctaccgggaaaagcgcaatttc
acgcgaacgcccgagcccgaaggggcggtggaacccgccgccggagcgctgcgctttgtc
atccacaagcactgggccacgcggctgcactacgacttgcgcctggaatgcgagggcacg
atgaaaagctgggccgtgcccaaaggccccagcctggatccgcgcgagaaacgcatggcc
gtgcaggtggaagaccaccctatcagctacaacagctttgaaggccagattccgccaggc
cagtacggcgcgggccgcgtcgtgctgtgggagcgcggccactggattccccacagcgac
cccgtcgccgggctgcgcgacgggcatctgaagttcacgctgcaaggcgaaaaactgcac
ggcagctgggcactggtgcgcatgggcggaaagcgttttgacccgaaaaagcccgcctgg
ctgctcatcaaagagcgggatgctgaggcgcggccggcggacgagtacgacgtgaccgaa
gcactgcccgacagcgtgaacactggtgcagcggcaaaggcccaacccgcgcccaaggcg
gccaagcaagcgcccagccagccagagcgcaagagcaccgcaaaaatatcaacccaatct
gcagcactcggaagcccactcaaggcgcttccccagacgctggcgccgcaactggccacg
ctcgccaacgcgccgccatcggatggcgtgggctggatttacgagctgaaatttgacggc
taccgcatgcttgctcgcatcgacgcgcgcggcgccgtgcgcttgttcacccgcagcggc
aacgactggaccgacaaactcgcctccatcgccgacgccatcaaggccttgggcctgcgc
tccacttggctcgacggcgagctcaccgctaccggcgacaacggagcgccggactttcag
cgcctgcaaaacgcttttgatcgcgcggccaccaccgaccttatctacaccctgtttgac
ctgccggtgtacgcggggcgtgacctgcgtgaagaaccgctgctggagcgccgcgcagcg
ctggaagcgctcgtgcaaaaagacgctggcgagaccctgcggttcagcgcagcgtttgac
gcccgcgcctcagacctcgttgcatccgcctgcaagattggctttgaaggcgtcatcggc
aagcgcgccgatgcgccttatcggagcggccgcagcagccaatggatcaagctcaaatgc
agccagcggcaagagtttgtcgtcggcggtttcaccgaaccgcaaggggggcgcagtggc
ctgggcgccttgctgcttggtgtgcacgatggcaaaggcgcgttgctgtatgccggcaag
gtaggtaccggctttaccgacgacgcgctccaacgtctgcgcgcgcagctcgagcctttg
gtgcagaagcgctgtccgttttcggcccagcctgcggacgcacgcaaggcgcattggctc
aagcccactctggtggccgaagtggccttcgctgagtggacacaagacggccgcatccgc
cactcggttttcaaaggcttgcgcaccgacaagccggcccacagcatcgtgcgcgagcag
gccactcggccggccgccacaacggcagcgcagcccaaaggcaaacgtccggtcggcgcc
aaggcaccgtcgccggcattgccatcgagtttcagcatcacccatggcgagcgcgtgatt
gacgcggccagcggcactaccaaacgggacctggcgcgctactacgccacggtggcgccg
ctgatgcttgagcacttggcgggccgcccggtggccctggtgcgcgcgccccaaggggtg
ggcaaggaaactttctttcagaagcacggggacgccgagcgcctgcccggcatcgaagcg
ctcgacccccaactcgacccgggccacggcccgctgctggaagttgtctcagccgtgggg
ctgctgtcggcggcgcaaatgaacgtcattgagtttcacacctggaacgcccgtgcagac
cgcatcgagcggcccgaccgcatcaccttcgacctggacccgggcgagggcgtggcctgg
ccgcaaattcaagaagcggccgaactggtgcgcgtgctgctgcgcgaactgggcttgccg
gcctttctgaaaaccagtggcggcaagggcttacacgtggtcgtcccgctcaagcgcctg
cgcgattgggacagcaccaaggatttttcgcaagccgtggtgcagcacctggcgcgcgcc
attccgcagcgcttcgtcggcaaaagcggcccgcgcaatcgcgtcggcaaaatttttgtc
gactacctgcgcaacggccgcggcgccaccaccgtgtcggcctggtctgcccgtgcccgg
cccgggctgggcgtatcggttccggtggcgtggtccgaattgccctcgattgccagtggc
gcgcactggacggtagccaccatcgaagaccggctgcgcctgggcaacgggccctggacc
ggttacgacaaagcggcgtcggcgttgggcgaagccatggcgcgcctcgacttcacgcca
tcggcctga
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