Stenotrophomonas indicatrix: DAIF1_12820
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Entry
DAIF1_12820 CDS
T07128
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DAIF1_12820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_12820 (mfd)
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DAIF1_12820 (mfd)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DAIF1_12820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
LcrG
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QBR43736
LinkDB
All DBs
Position
complement(1424243..1427707)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTQYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARTHDAPLLVVARDNHGANQIEA
DLHTLLGGDPSLPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPTLKRGLVVVPVQTL
LQQLAPRSYVIGGSFNLEVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDDASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGIEYYLPLFFERTATLFDYLPAGSLPVVCVGAAEAAET
FWTQTGERYEQRRHDVERPLLPPSALYLSPDLLRERLNDAPRIEVWAADHARIAEAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LLSFLASDERFAIAVAPLEDGFALDAPHIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVVVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLIVPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGHLPDIDAGEEARGAEVELHVPAL
IPDDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKNLFAIAELKLQAS
SLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMDGPDKLRVKHPLPLPEDR
FNAARALLLTLALR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtactcaataccccgccccgccgctgccacgtgccggccagcttcgcgcctgg
tggcgcgcccccgcctcgcccactgccctggcctggtatctggcccaggcagcgcgcacg
catgacgcaccgctgctggtggtggcccgtgacaaccacggtgccaaccagatcgaagcg
gatctgcataccctgctgggaggcgacccgagcctgccggtggtggcgttcccggactgg
gagacgctgccctacgatcgcttcagcccgcacccggacatcatttcgcagcgcctgtcg
gccctgcaccgcctgcccacgctgaagcgcggcctggtggtggtgccggtgcagaccctg
ctgcagcagctggctccccgcagctatgtcatcggcggcagcttcaatcttgaagtcggc
cagcgcctggacctggaagcggagaagcgtcgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggtgatttcgccgtgcgtggcggcctgcttgacgtctacccg
atgggcgccgacgagccgctgcgggtggaactgctggacgaggacatcgattcgatccgt
gcgttcgatccggaaagccagcgctcgctggacaaggtcgaggcggtgcacatgctgccc
ggccgcgaagtaccgatggacgacgccagcatcgcccgggtgctggcgaccctgcgcgag
cgcttcgacgtcgatacccgacgcagttcgctgtaccaggacctgaaatcgggcctggcc
ccggccggcatcgagtactacctgccgctgttcttcgagcgcaccgccaccctgttcgac
tacctgcctgccggcagcctgccggtcgtctgcgtgggcgccgctgaagcggcagagacg
ttctggacgcagaccggcgagcgctacgagcaacgccgccatgatgtagaacgaccgctg
ctgccaccgtcggcgctgtacctgtcgccggacctgctgcgcgagcgtttgaacgacgca
ccgcgcatcgaggtttgggccgccgatcacgcccgcatcgccgaggcgcatgcgctgggc
gaccagccgttgccgccgctgccggtggccgcgcgcgaggcaccggccggtgacgcgctg
aaatccttcctcggccattaccctggccgggtgctgatcgccgccgattcgccgggccgt
cgcgaggccctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgctgtccttcctggccagcgacgaacgcttcgccattgccgtggcgccgctggaagac
ggcttcgccctggatgcgccgcacatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgtcgcacgcgccgcgccggacgagagccggaagcgatcatccgc
gatctgggcgaactgaccgaaggcgcgccgatcgtgcacgaggaccatggcgtcggccgc
taccgcggactgatcgcgatggacgtcggcggcatgcccggcgagttcctcgaaatcgag
tacgccaagggcgaccgcctgtacgtgccggtcgcacagctgcacctgatcagccgctat
tccggcgcctccgccgaaaccgcgccactgcattcactgggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgatgtggccgccgagctgctggagatccag
gcccgccgccaggcgcgtgccggactggcactgcaggtggaccgcgcgatgtacgagccg
ttcgccgccggtttcccgttcgaggaaaccccggaccagctggccgccatcgacgccacc
ctgcgtgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtgggcttc
ggcaagaccgaagttgccgtgcgtgccgcatttgctgccgccagcgctggcaagcaggtg
gcggtgctggtgccgaccacgctgctggccgaacagcattaccgcaatttccgcgaccgc
ttcgccgactatccgatgaaggtcgaggtgctgtcgcgcttcaagagcaccaaggagatc
aaggccgaactggagaaggtcgccgccggcaccatcgacgtcatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcgtcgtcgacgaggagcag
cgcttcggcgtgcgccagaaggaggcgctgaaggcactgcgcgccaacgtgcacctgctg
accctgaccgctacgccgattccgcgtacgctgaacatggccatggccggcctgcgcgat
ctgtcgatcatcgccaccccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctggcacgcggtggccagctg
tatttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgcccgaagcgcgcatcggcatcgcccatgggcagatgcccgagcgcgagctggaaaag
gtgatgctggacttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgtgccgaccgcttcggc
ctggcccagctgcaccagctgcgtggccgcgtcggtcgatcgcaccaccgcgcctatgcc
tacctgatcgtgcccgaccgtcgctcgatcacgccggatgcggaaaagcgcctggaagcg
atcgcctcgatggacgaactgggtgccggcttcaccctggccacccacgatctggaaatc
cgcggcgccggcgaactgctgggcgaggaccagagcgggcagatggccgaagtgggcttc
agcctgtacaccgagctgctggaacgcgcagtgcgcagcatcaagcagggccatctgccc
gacatcgatgccggcgaagaagcgcggggcgccgaggtcgagctgcacgtgccggcgctg
attccggacgactacctgccggacgtgcacacccgcctgacgctgtacaagcgcatttcc
agcgcgcgcgacagcgatgcgctgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagaacctgttcgccattgccgagctgaagctgcaggccagc
tcgctgggcatccgcaagctggacctgggcgagaacggtggccgcatcgtgttcgaatcc
aagccgaacatcgatccgatggcggtgatccagctgatccagaaacaaccgaacctctat
gccatggacggtccggacaagctgcgcgtcaagcatccgctgccgctgcccgaagaccgc
ttcaatgccgcgcgggcactgctgttgaccctggccctgcgctga
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