Sesamum indicum (sesame): 105170276
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Entry
105170276 CDS
T04135
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105170276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105170276
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105170276
Complex C
U5 SnRNP specific factors
105170276
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
Roc
Septin
Ras
SRPRB
Motif
Other DBs
NCBI-GeneID:
105170276
NCBI-ProteinID:
XP_011089261
UniProt:
A0A6I9TZ04
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Position
LG9:complement(1997106..2004548)
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AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREEEDEELPERAEDEQPVSDDEHGPGKPNGWLTTTE
DVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVKNLKFELGVKDS
STYVSTQFLLGLMSNPALVRNVALVGHLHHGKTTFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ITAASSTAGNVQVVDPAVGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDANKFASRLWG
DYYFDPDTRSFKKKQPASGAERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSN
AAYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAPRKVEHIYTGPKDSTIYQAM
EDCDASGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLEYDDDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLNRGTGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMM
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttgtatgatgagtttggcaactacattggacctgagattgaatccgat
caagagagtgacagggaggaggaagatgaggaactccctgaaagggctgaggatgagcag
cctgtgtctgatgatgaacatgggcctggaaaaccaaatgggtggctaaccactactgag
gatgttgatatggatggccaaattgtcctagcggaggataaaaaatactacccaaccgca
gaagaggtttacggtgaagaagtcgaaactttagttatggatgaagacgagcagccactt
gaacaacctattattaagcctgtaaaaaatcttaagttcgagttgggggttaaggattca
tcaacgtatgtgtcaacacagttccttttgggtcttatgtcaaaccctgcgttggtcagg
aatgttgctttggttggccacttgcaccatgggaagacgacgttcatggacatgttggtt
gaacagactcatcatatctcaacctttgatcaaaacagcgagaaacatatgaggtacacg
gatacgaggatagatgagcaggagagaagaatatccattaaggcagttcccatgtcactt
gttcttgaggatagcaattcaaaatcatacctttgcaacatcatggatacgcctggtcat
gttaacttttctgatgagatgactgctgccctcagactcgctgatggtgcggtgttgatt
gtagatgctgcagaaggagtgatggtaaacacggagagggcaatacgccatgctatccag
gagcggatacccatagtagttgtgataaataaggtcgacagattgataactgagctgaag
ttgcctccaaaggatgcctaccataagcttaggcacacaattgaggtcatcaacaaccac
ataactgctgcatcttcaactgctggtaatgttcaagttgttgaccctgctgttggaaat
gtttgttttgcaagtgccagtgcaggatggtcattcaccttgcagtcgtttgctaagcta
tatgttaagctccatggtattccgtttgatgctaataagtttgcttctcgcctttggggt
gattattacttcgatcctgataccagaagtttcaagaagaaacaacctgctagtggtgcg
gaacggtcctttgtccaatttgtgctagaacccctttataaaatatatagccaagtgatt
ggagaacataagaagagtgtggaggctacacttgctgaacttggtgtgaccttgagtaat
gcggcttatcgattgaatgttaggcctctgttaagattggcatgcagctcagtttttggt
agtgccaccggctttacagatatgttggttcaacacattccatctgctaaagatgctgca
cctcgaaaagttgagcacatttacactgggccaaaggattccacaatctaccaagccatg
gaggattgtgatgcatcaggtcctctaatggttaacgtaacaaaactgtatcctaaatct
gattgcagtgtttttgatgccttcggtagggtctacagtggggaaattatgacggggcag
actgtgcgtgtgttgggagaaggctattctccagatgatgaagaggacatgacagtgaaa
gaagtgacaaaattatgggtctatcaagctcgttataggattcctattagcaaggcccct
cctggttcttgggttcttattgaaggtgtggatgcttctattatgaagactgccacactc
tgcaacttggaatatgatgatgatgtgtacatattcaggccccttcagttcaacacgctt
cctgtggtgaaaactgctactgagcctttgaatcccagtgagttgccaaaaatggtggag
ggccttaggaagatcagcaagagctatccactagcaattacgaaggtcgaagaatctggg
gaacatactattttaggtactggagaattatacctggattctataatgaaggacctcaga
gagctttattcggaagtagaagtcaaggtggcagatcctgttgtctcattctgtgaaaca
gttgtggaatcctcttcgatgaaatgttttgctgaaactccaaacaagaaaaataaaatt
accatgattgcggagccactggaaagaggacttgctgaggacattgagaatggtgttgta
agcattgactggccacggaagaagcttggtgacttcttccagacaaagtatgattgggat
ctgcttgctgctcggtctatttgggcatttggtcctgacaagcaggggcctaatatctta
ttagatgatacactgtcgagtgaggtcgataagagtttgcttaatgcagtcaaagattct
attgttcaaggttttcaatggggggctcgagaaggccccctctgtgacgagcctatcaga
aatgtgaaattcaaaatagttgatgccaaaattgcccctgagccattgaatcgtggaact
ggtcagattattccaactgctcgacgagtcgcctattcagctttccttatggccactcct
aggctgatggaacctgtatactatgtggagatacaaactccaattgattgtgtttccgca
atatatacggtattatcacgtcgacgtggtcatgtcactgcagatgttccacaaccagga
accccagcctacattgttaaggcatttctgcccgtgatagagtcatttggttttgaaaca
gacctgaggtatcatactcaggggcaggcattttgcttatcagtatttgatcactgggct
atcgtccccggagatccacttgataaaagtatagttttacgcccattagagccagctccg
atccagcatttggcccgtgaatttatggtgaagacgaggcgtcgtaagggaatgtcggaa
gatgtaagcattaataaattcttcgatgaggcgatggttgttgaactagctcagcaggct
gccgatcttcatcaacagatgatgtga
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