Sulfitobacter indolifex: DSM14862_01932
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Entry
DSM14862_01932 CDS
T08028
Symbol
udg_2
Name
(GenBank) Type-4 uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSM14862_01932 (udg_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinl03400
]
DSM14862_01932 (udg_2)
Enzymes [BR:
sinl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
DSM14862_01932 (udg_2)
DNA repair and recombination proteins [BR:
sinl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSM14862_01932 (udg_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UOA19144
LinkDB
All DBs
Position
cDSM14862:1956251..1957681
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AA seq
476 aa
AA seq
DB search
MHRVSLPPIGTAKAWREAARGFLAAGVPPEQILWGDHAAAPDLFGGESAPPSGGKVSVPR
SFISMAETAVWHSDPERFARLYAFLWRVKDAPHLMSDRGDADLAVLRGMEKNVRRCQHKM
KAFVRFREIGVPDAPRRSFAAWFEPTHHTVEPTADFFVRRFSDMDWRILTPDVSAIFENG
KLTFQEGHSKPDLPEDAGEQLWITYFQNIFNPARLMVKAMQSEMPKKYWKNMPEAAFIPQ
MIAEAPARARAMAEAAPTLPPVRMDRVQAQLSAFDSAWDGPMEELPAAIRACTRCPLHCH
ATQAVPGEGPTRADLMVVGEQPGDQEDLAGRPFVGPAGQMFDRVASEAGLDREAAYVTNA
VKHFKFTARGKRRIHQRPETSEIDQCRWWVNAEVAQVQPKLILAMGATAAQSLTGSGAGI
LKRRGTIEAGPEGIPVLITLHPSYLLRVPDPALREEAEAQFRSDLAMAARMMAEAA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcgtcagcttgccccccatcggcaccgccaaagcgtggcgcgaggccgcgcgc
gggtttcttgcggctggcgtgccgcccgagcaaatcctctggggggatcacgccgcggct
cctgatctgttcggcggggaaagcgctcccccctcaggcgggaaggtctcggtcccgcgc
agctttatctcaatggccgagaccgccgtctggcatagcgaccctgagcgttttgcccgg
ctctatgcttttctgtggcgggtgaaagacgcgccgcatttgatgtcggaccgaggcgat
gccgacctcgccgtgctgcgggggatggagaaaaacgtccgccgctgccagcacaagatg
aaagcctttgtccgcttccgcgagatcggcgtgcctgacgccccgcgccgcagctttgcc
gcgtggttcgagcccacgcatcacaccgtagagccgacggcggatttcttcgtgcggcgg
ttttctgacatggactggcgcatcctcactcccgatgtctcggcgattttcgagaacggc
aaactcactttccaagaaggccacagcaagcccgacctgcccgaagacgcgggcgagcag
ctttggatcacctacttccagaacatctttaaccccgcccgcctgatggtgaaggcgatg
cagtccgagatgcccaagaaatactggaaaaacatgcccgaggccgccttcattccccag
atgatcgccgaagcccccgcccgcgcccgcgcgatggccgaggccgcgccgaccctgccc
cccgtccgcatggatcgggtgcaagcacagctcagcgcctttgattccgcatgggacggc
ccgatggaagaactgcccgccgcgatccgcgcttgcacccgctgcccactgcattgccac
gccacccaagccgtgccgggcgaagggccgacgcgtgcggatttgatggtggtgggcgaa
cagcccggcgatcaggaggatttggcaggccgtcccttcgtcggccctgccgggcagatg
ttcgaccgcgtggcatcagaggccgggctggaccgcgaggcagcatacgtgaccaacgcc
gtcaaacacttcaaattcaccgcccgtggcaagcgccgcatccaccagcgccccgagacc
tccgagattgatcaatgccgttggtgggtgaacgccgaggtggcgcaggtgcagcctaaa
ctgatcctcgccatgggcgccacggcggctcagagcctgacgggttccggtgcgggcatc
ctcaagcggcgcggcaccattgaggcggggccggaaggcatcccggtgctgatcaccctg
cacccatcctacctgcttcgagtaccggacccagctctgcgcgaagaggccgaggcacag
tttcgctccgacctcgccatggccgcgcgtatgatggcggaggcggcttaa
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