Setaria italica (foxtail millet): 101766190
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Entry
101766190 CDS
T02818
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101766190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101766190
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101766190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
zf-RanBP
Vps36-NZF-N
G-alpha
AAA_29
zf-Sec23_Sec24
Motif
Other DBs
NCBI-GeneID:
101766190
NCBI-ProteinID:
XP_004960066
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Position
III:803945..809030
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AA seq
687 aa
AA seq
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MFVPMLDNRSDLEKPSINPGMWQCSICTHENDTSNLSCELCGVLRDVSLYFNNISEAEAG
AKRRNKYSGVSVLARSLFAPSSTKSEAIIFSDGSQDNRNATGNKQATMDALHKTYMPNKK
RHINIVPFKFDTPSPDDMVTTGLKSSRNFRKVDTEVLIKDSVDVAGEKTMDSGILVTEKD
TSMDPSASAELDELGGTSSSVPSSSQNITLVLDHELQHLSLESKPKSSKPKIKKPASISQ
YKPEPWMLQSEDQEMRRQLNLAIVGHVDSGKSTLCGRLLHALGLISKKQMHKYEKEAKEK
GKGSFAYAWAMDDSTDERERGITMTVAVKYFDTEKYHVVLLDSPGHKDFVPNMISGATQA
DAAVLVVDASIGSFEAGMGVNGIGQTKEHSQLIRSFGVENLIVAVNKMDQVEYSKDRFNF
VKSQLGIFLRSCGFKDSSVTWVPLSAMANENLVTAASDSRLLSWYNGNCMLKSIDSLPPP
HHDVSRPLRLPICDVIASITLGQVAVCGKVEAGGIRTGSKVLVMPSGDLATVKTIERDSS
RCSSARAGDNIAVGLQGIDTSHLVSGGVICHPDFPVRIASRLELKILVLEITTPILVGLQ
FELHIHHARVSASLVKIPSLLDQKTGKASKKMPRLLTAKQAAIVEVKLDKEVCVEEFSTL
KALGRVFLRSRGNTVAVGVVTRILDQA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcccatgttagataacaggtctgatcttgagaagccctctataaatcctggg
atgtggcaatgctccatttgcacgcatgaaaatgatacaagtaatttatcctgtgagcta
tgcggtgtacttcgtgatgtgtcactgtatttcaataatatcagtgaagctgaagctgga
gctaaacgcagaaacaagtattctggagtgtccgtattggcaagatctctttttgcacca
tctagtacgaagtcagaggctattattttctctgatggctcccaagacaatagaaatgca
acagggaataagcaagctaccatggatgctctgcacaagacatacatgcccaacaaaaag
cgccacattaacatagtgcctttcaagtttgacacgccatctcctgatgacatggtcact
acgggcttaaaatcatcaagaaattttagaaaagttgacacagaggttttaattaaagat
tcagttgatgtcgctggagagaagacgatggatagtggtattcttgtaactgaaaaggat
acaagtatggacccaagtgcatcagcagagttggatgaacttggcggaactagtagcagt
gttccttccagtagtcaaaatataactcttgttttggaccatgagctacagcatttaagt
ttggagagcaagccgaagagcagtaaacccaagattaagaaaccggcttctatttcacag
tacaagccagaaccatggatgctccagagtgaagatcaagaaatgcgtagacagctaaat
cttgccattgttggtcatgtcgattctgggaaatcaactttatgtggtcgattactgcat
gctcttggattgatttcaaaaaagcagatgcataaatatgagaaagaagctaaagaaaag
gggaaaggatcatttgcatatgcttgggccatggatgacagcactgatgagagggagcgt
ggaattacaatgactgtggctgtaaaatactttgacactgagaaataccatgtagttttg
ctcgactcccctggtcataaagactttgttcctaatatgatatctggtgctacacaagct
gatgcagccgtcctagttgttgatgcgtctataggctcatttgaagcaggcatgggtgtt
aatgggattggtcaaacaaaggagcactcgcaacttattaggagctttggagttgagaac
ttgattgttgctgttaataagatggatcaggtggaatattcgaaggaccggtttaatttt
gttaaatcgcaacttggtatctttcttcgatcatgtgggttcaaagactcttcagtcact
tgggttcctctgagtgcaatggcaaacgaaaacttagtgactgctgcttcagattctcgt
cttttgtcatggtacaatggaaattgtatgctgaaatccattgactcgctacctcctcct
catcatgatgtttcaaggccactacgccttcccatctgtgatgttattgcatctatcaca
ctggggcaggtggcagtttgcggtaaagtcgaggctggaggaatccgaactggttctaag
gttcttgtcatgccttccggagatttagctacagttaaaaccatcgagcgggattcctct
cgttgcagctcagcaagagctggggacaacattgctgttggtttgcaagggatcgacacc
agtcaccttgtgtcaggtggagttatttgccatccagatttccccgtgcgcatcgcttct
cgcttggagctgaaaatcttggttctagaaatcactacaccaatactggtcggccttcag
ttcgagctgcacatacatcatgcgagggtgtctgcgagcctggttaaaataccgtcattg
ctggaccagaagaccggcaaggcctcaaagaaaatgccacgtctgctcactgcgaagcag
gctgctatagttgaagtgaagctggacaaggaagtgtgcgtggaagaattctcgactctg
aaggcgcttgggcgggtgttcctgcggtctcgaggcaacaccgttgcggtgggcgttgtg
actcgaattctggatcaggcttag
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integrated database retrieval system
