Streptococcus intermedius C270: SII_1669
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Entry
SII_1669 CDS
T02831
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
siu
Streptococcus intermedius C270
Pathway
siu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
siu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SII_1669 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
siu03021
]
SII_1669 (rpoB)
03400 DNA repair and recombination proteins [BR:
siu03400
]
SII_1669 (rpoB)
Enzymes [BR:
siu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SII_1669 (rpoB)
Transcription machinery [BR:
siu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SII_1669 (rpoB)
DNA repair and recombination proteins [BR:
siu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SII_1669 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
AGU78829
LinkDB
All DBs
Position
complement(1759961..1763527)
Genome browser
AA seq
1188 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIKESKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGRYKINKKLNIKNRLLNQTIAEPLV
DPETGEILVEVGTVMTRSVIDSIAEQLDNSLNKITYIPNDSAVLTNPVELQKFKVVAPTD
PDRVVTIIGNANPGDRIHTITPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDRKAGIVTNEIVWLTADEEDEYIVAQANSKLTEDGRFAEAIVMGRH
QGNNQEFPSDQVDFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
YVGTGMEYQAAHDSGAAIIAQHDGKVVYSDAAKVEVRREDGSLDVYHITKFRRSNSGTSY
NQRTLVKVGDMVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGAGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGASADDLWDTVREAGMDNDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDINGRLRAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDNEVELRDLDEGMDDDVIHVDDLEKAREKAAQEARAAFEAEGKE
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcaatacgggaaacaccgtactcgtcgtagtttttcaagaatc
aaggaagttcttgatttaccaaatttgattgaaatccagacggattcgttcaaagatttt
cttgaccatggtttgaaagaagtatttgaagatgtacttcctatctcgaactttacagat
acaatggagttggagtttgttggttatgaaatcaaagaatctaaatacaccttagaagaa
gcacgcattcatgatgctagctattctgcacctatttttgtgactttccgtttaatcaac
aaagaaacgggtgaaatcaagacgcaagaagtgttctttggtgattttccaatcatgaca
gaaatgggaacctttattatcaatggtggtgagcggattatcgtatctcaacttgttcgt
tcgccaggtgtttactttaatgataaagtagacaaaaatgggaaagttggttatggttca
actgttattccgaatcgtggagcttggttagaactggaaactgattcaaaagatattgct
tacactcgaattgatcgtactcgtaagattccatttacgacgcttgttcgtgcacttggt
ttctctggtgatgatgaaatctttgacatttttggagatagcgaacttgttcgtaatacg
attgaaaaagatattcataaaaatccgatggactcacgtacagatgaagcactcaaagaa
atctatgagcgccttcgtccaggtgagcctaaaacggcagattcctcacgtagtctttta
atcgcacgattctttgatgctcgtcgttacgatctggcagctgttggtcgttacaaaatc
aataaaaagctgaatattaaaaaccgtttattgaatcaaacgattgcggaacctttggta
gacccagaaacaggggagattttagtagaagttggaacagttatgacccgcagtgtcatt
gacagcattgcagagcagttggataatagtttgaacaaaatcacttatattccaaacgac
tcagctgtcttgacgaaccctgtagagctgcagaagttcaaggttgtggcaccaactgat
ccagatcgtgtagtgactattattgggaatgctaatccaggtgaccgaattcatactatt
acaccagcggatatcttggctgagatgagctacttcctcaacttagcagagggcatcggc
cgtgtggatgatattgaccacttgggaaatcgtcggattcgtgcagtaggtgaattgctt
gctaaccaagttcgtcttggtctttctcggatggagcgtaatgtccgcgaacggatgagt
gtacaagacaatgaagtattgacaccacaacaaatcattaatatccgtccagtaactgca
gctattaaagaattctttggatcttcccagttgtctcagttcatggatcaacataatccg
ttgtctgagctttctcacaaacgtcgtttgtcagctttaggacctggtggtttaacacgt
gaccgtgctggttatgaagtgcgggacgtgcactacactcactatggtcgtatgtgtcca
attgaaacaccagaaggaccaaacatcggtctgattaataacttgtcttcttatgggcat
ctaaataaatatggatttatccaaacaccttaccgtaaggtagaccgtaaagctggcata
gtaaccaatgaaatcgtttggctaacagcggatgaagaagatgaatacatcgttgcacaa
gcaaattctaaattaacagaagatggtcgctttgcagaggcgattgttatgggacgccac
caagggaataaccaagaatttccttcagatcaagtagatttcatggatgtatcacctaag
caggtagttgcggtggcgacagcatgtattcctttccttgaaaatgatgactcaaaccgt
gccctcatgggtgctaacatgcagcggcaagctgttccgttgattgacccacatgcacca
tatgttgggacaggaatggagtaccaagcagctcatgattctggagcagcgattattgca
cagcacgatggtaaagttgtctattctgatgctgctaaagttgaagttcgccgtgaagac
ggttcccttgatgtttatcatattacgaaattccgccgctctaactctggaacgtcttat
aatcaacgcacgttggtgaaagttggtgatatggttgaaaaaggagactttatcgctgat
ggaccttcgatggaaaaaggtgaaatggcacttggtcaaaatccaatcgttgcttacatg
acatgggaaggttacaactttgaagatgctgttatcatgagcgagcgtctagtaaaagat
gacgtttatacctctgttcacttggaagaatttgagtcagaaactcgcgacaccaagctt
gggcctgaagaaattacccgtgaaattccaaatgttggggaagatgcacttcgcaatttg
gacgaaatgggtattatccgaattggtgctgaggtgaaggaaggagacattcttgtcggt
aaagtgacaccaaaaggtgaaaaagacttgtccgcagaagaacgtctacttcatgcaatt
ttcggtgataagtctcgtgaagtacgtgatacatcccttcgagtaccacacggtggtgca
ggtgttgttcgtgatgtaaaaatctttactcgtgcgaacggtgatgaattgcagtcaggc
gtcaatatgttggtgcgtgtttatatcgcccaaaaacgaaaaatccgtgttggggacaag
atggcaggacgacacgggaacaaaggggttgtttcccgtatcgttccagtagaggatatg
ccttatcttccagatggaacgccggttgatatcatgttgaatccacttggggtaccatcc
cgtatgaatatcggacaagttatggaacttcaccttggtatggctgctcgcaaccttggt
atccacattgcaacgccggtctttgatggagctagcgcagacgatctttgggataccgtt
cgtgaagcaggtatggataatgatgctaagacaatcctttatgatggtcgtacgggtgag
ccctttgataatcgtgtatccgttggtgtcatgtatatgattaagcttcaccacatggta
gatgataagcttcatgctcgttcagttggtccttattcaaccgttacgcaacaacctctt
ggtggtaaagcacaatttggtggacaacgttttggagagatggaagtttgggctttggaa
gcttacggtgcttctaacgtccttcaagaaatcttgacctacaagtcagatgatatcaat
ggccgtttgagagcttatgaagctattactaaaggtaaaccaattccaaaaccaggtgtc
ccagaatccttccgtgtccttgtgaaagaattgcagtcacttggtcttgacatgcgcgtc
ctagatgaagatgacaatgaagtagaacttcgtgacttggatgaaggtatggatgacgat
gtgattcacgtagatgaccttgaaaaagcgcgtgaaaaggcagctcaagaagcgagagca
gcttttgaagctgaaggaaaagaataa
DBGET
integrated database retrieval system
