Scomber japonicus (chub mackerel): 128366455
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Entry
128366455 CDS
T09718
Symbol
virma
Name
(RefSeq) protein virilizer homolog isoform X1
KO
K22910
protein virilizer
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128366455 (virma)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
128366455 (virma)
BRITE hierarchy
Motif
Pfam:
VIR_N
Chol_subst-bind
BUD22
V-ATPase_H_N
Motif
Other DBs
NCBI-GeneID:
128366455
NCBI-ProteinID:
XP_053183147
LinkDB
All DBs
Position
10:11154896..11171193
Genome browser
AA seq
1815 aa
AA seq
DB search
MAGDTSTELLFLDTFKHQSAELTNVDVVRFPCAVLVTEVRVIPPGIKAHSNLPDNRAFGE
TSPHAFQLELFFNNVLKPNSPTFHRLGSLEYDENKSIVFRPSGKINTDGLVLRGWYTSLT
LAVYGTAERSHGHDQDSPPPPPPPPPQQPSGPKRIIKQEWEKDDQYNGSPPRPAPRGPRT
PPGPPPPDDDDEEQVQVTVGVVKDEPCEGRDDYLEAVSPERSLPADETYSDAEQEEEVEE
EEEEEEQEEEEDARTEGSAPEEEEEEEEEEDEGEEEEEEMEEGDDGYEQISSDEDDLDNG
SFKLPTFDMDYTPEDLASVPPVQYDPYERELRPLLFFSPPYKTRFDTQFEKASVEEPRDP
SSEGPAVGEEAEAVAQLKELLASIGDDRDARWVTALEEAPGLLAKGLAYMIKQGDGEVED
PVGILVQWTLQALSMEVALTQPIALNLRQLKAGAKLASYLAECPQGLTLLLRKGALSVLL
ELLHRDHVSSTLKLCILRALDALTSAPAGVEAFLHTGESDKSGYQHLVQLYLREETVRVI
TAGNAVIQKSHMYEVLVDLQRTAAAWSEPQQEEMEDGESPMEEEPSLSPSPVSESELDRL
AGVLEELHHLLETASHCMVQPPGKAFPTTARITGPQERDDPYPALYRYMHACHFLESTTV
VLSAAAAAGHLGVTQGVKELLRFLSLTQSGLLFLLAQPTPTSLLLRLLASVVEAEVEETT
FTGSEGSLTGPGFGEEGFGVWLMQALHALQGVSELMSHVATGGDGGAGLEEGDNAEVLGM
LHALYLMTFTQTGRSAVAHVLSLDNNLSCLVTLLQHHSKDGQGEAKARKAVTYNYACMLV
LLVAQSSNELRMMEQYAAPLLVLAKADDTNAKLQELSKWLEPLEKLRYEIGSIPTLIDYI
KQNVENVLTPEGTGLVTALRVLCHIACPPPAVEGQQRDLKWSLAGVQLFSGEGLDTCVRV
LQKLFSVLLQPWRMHGHMGPTPQRCMILSICISTLRLLRTMLMELLRGGAFQFRDTRVAS
VLVSLHMIVCSIPASGRLDGEETRVQALIVDVLLTFTQGVNEEVTHTEETLASNTWSLML
KEVLGSLLKAPEGLFSGLTLLSELLPLPLPMQSTQVISVQDVAVALNTRKLWSMHIRAHW
KVFSEALRCVCATSCPPLLAMLRRVCVQLADLSSPTATLIMKTLLELLLEELQPAEGKGV
CWGQVLRLLSLTDALVSQRACKSAMLHLLSGSVSGDEQLADLFPLLLSLLVPPTVHSIQQ
QQCSEIVGTILQSLCDQDISLVVSPPSESCLSEVELLANALPGREIMSSVCNALLEVLGN
AESSVPLLLTCIRTLTFLTEHDYGLYHLKVALKKHSAELYSLFKRLVSFNKDSADLLSAL
LDFLRQILNTETMCVEEGQGSGEESAFAPPPRLLTASEMKSLLQWEESESHPLPTLEKQI
TELCKEDDSLETMLENVIVLRQTLETATDTPPAADTEPTLPAPETLGAQFNHRTVFILSE
ALDEQLKALWFSPFQTDDIETDLDMVKVDLVGLAQECCPELDLKSELERSFLSEPSSPGH
TKATKGFRLGKHKHETFITSSGKSDYVEPAKRAHIMAAPRGRGGRGGFGQNLNRPHDIFR
QRKQNTSRPPSMHVDDFVAAEFKDITTPLGLLPPKRPPKSSPKPPTRGLFTGNRGRATFH
SQTRFFTPPQPKGVLLSGNYTRREGRGSSWSGQVPAVTHRGTYSEPRGGQSNFTRGPLPS
RQPPASAYRLAPRDRAPRGRGGTGLSWLSGGGGGGSAGGGGGGGGGGGRGSQGSKFSGGG
GSGGGRGRHVRSFTR
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggacacttcaacggagctcctctttctagacaccttcaagcatcagagtgca
gagttaaccaacgtagatgtggtgcgttttccctgtgcggtgctggtcacagaggtacgg
gtcatccctccagggatcaaagcacacagcaacctacctgacaacagagcatttggggag
acatctcctcatgctttccagttggagctgttcttcaataatgtcctcaaacccaacagc
cccaccttccacagactgggcagtctggaatacgatgagaacaagtccatcgtgttcaga
cccagtggaaagataaacacagatggcctggtgctgcgggggtggtacaccagtctcact
ttggctgtgtacgggacagcagagcgctcacacggacatgaccaagactcaccccctcca
cctccacctccacccccccaacagccaagtgggcccaaaaggattattaaacaagagtgg
gaaaaagacgaccaatacaatggcagcccacccagaccagcaccacgagggcctcggact
ccacccgggcctccacctcctgatgatgatgatgaggagcaggtccaagtgacagtgggc
gtagtcaaagatgagccatgcgagggacgtgatgactacctggaggccgtatcacctgag
aggtccctgcccgctgatgaaacgtactcagacgctgaacaagaagaagaagtcgaggag
gaggaggaagaagaggagcaggaggaggaagaagacgcacggaccgagggcagtgctccg
gaggaagaggaggaggaggaagaagaggaagatgagggtgaggaagaggaagaggaaatg
gaggaaggtgatgatggctatgagcagatttccagcgatgaggacgacctggataatggt
agctttaagttgcccacctttgacatggactacactcctgaggatctggcatctgttcca
ccagtccagtatgacccctatgagcgagaactcagaccactgctctttttcagccctcca
tacaaaactcgctttgatacccagtttgagaaggccagtgtggaggaacccagggacccc
agctcagagggaccagcagttggagaggaagctgaggccgttgcacagctgaaagagctg
cttgctagcattggggacgacagagacgcccgctgggtcacagctctggaagaagcacct
ggactactagccaaagggttggcttacatgattaaacagggagatggggaggtggaggat
cctgttggaatactagtccagtggactctccaagctcttagtatggaggttgctctcaca
caaccaattgctcttaacctcagacaattgaaagctggtgccaagctagcgtcatatctg
gcagagtgtccgcagggcctcacattgctgctgcgtaaaggggctctgagtgtgctgctg
gagctgctccacagggaccatgtctcttccacactgaagctatgtatcctgagagctctg
gatgccctgaccagtgctcctgctggggtggaggctttcttacacactggagagtcagac
aagagtggctatcagcatttagtccagctgtacttacgtgaagaaacagtcagggtcata
acagctggcaacgccgtaatacagaagagccacatgtacgaggtgctggttgacctgcag
cgaactgcagcagcatggagtgaaccacagcaggaggagatggaggatggtgagagcccc
atggaggaagagccatcgctaagcccctcgcctgtgagtgagtcagagcttgataggctg
gcaggggttttggaggagttacatcacctgctagagacggccagtcactgcatggtacag
ccccctggaaaagccttccccactactgcaagaataacaggcccacaagagagggacgac
ccctacccagcactgtacaggtatatgcacgcatgccacttcctggaaagcacgacagtg
gtgttgtcagcagctgcagccgccgggcacttaggtgtcacccaaggtgttaaagagctc
ctacgcttcctgtcgctcacccagtcgggtctgctcttccttctggcccagcccactccc
accagcctgctactgcgactccttgcatctgtggtcgaggctgaggtcgaggagaccacc
tttacaggaagtgagggaagtctcacagggcctgggttcggtgaagaaggctttggcgtg
tggctgatgcaggcactgcacgccttacagggtgtgtcagaactcatgagccatgtggcc
acaggaggagatgggggagcagggctagaagaaggggacaatgcagaggtgctgggcatg
ctccatgcgctgtacctaatgaccttcacccagactggccgcagcgctgtggctcacgtc
ctcagcctggacaacaacctgtcctgtctggtcactctgcttcagcaccacagcaaggac
ggacagggtgaagccaaggctcgcaaagcagtgacgtataactacgcctgtatgctggtg
ttactggtagcgcagagctccaatgaactgaggatgatggagcagtatgctgctccacta
cttgttttagccaaggcagatgacaccaatgccaagttacaggagctcagtaaatggctg
gagcctttggagaaactacgctatgagatcggtagcattcccaccctcatagactacatc
aaacagaatgtggaaaatgtgttgactcctgagggaactggactggtcactgctctcagg
gtcctctgtcacattgcctgtcctccgcctgctgtcgagggtcagcagagggatctcaag
tggagtcttgcaggggtccagctgttctctggcgagggtctggatacatgtgtgcgtgtc
ctgcagaagctctttagcgtgctcctgcaaccatggcgcatgcatggacacatgggcccc
acgccacagcgctgcatgatcctcagtatatgtatcagcacactccggttgttgcgcacc
atgctgatggagctgctccgtgggggagctttccaattcagggacactcgtgtggccagt
gtgttggtgtcactccacatgattgtgtgttcaatcccggcatctggacgtctagacggg
gaggaaaccagagtgcaggcgcttattgttgatgttctgctcaccttcacacagggtgtc
aatgaagaggtcactcatacagaggagactctggccagcaacacgtggtctctgatgcta
aaggaggttttaggatcactgctgaaagctcctgaaggcctcttctccggccttacgttg
ttgtctgagctcctgcctcttccactgccaatgcaaagcactcaggtgatatcagtccaa
gatgtggctgtagccttaaacacaaggaaactgtggagcatgcacatacgagcacattgg
aaagtattttccgaggctttgaggtgtgtgtgcgccactagctgccctcccctgctagct
atgctcaggagagtgtgtgttcagctggcggacctgtcttcacccacggcaacactcatc
atgaagactctgctggagctgctactggaggagctgcagccggcggaggggaaaggtgtg
tgctggggccaggtcctgcgtctgctttctttgactgatgccttggtgtcacagagagct
tgtaagagcgctatgttacacctgctgtctgggtctgtgtctggagacgaacaactggca
gatctgttccccttgctcctgtctctgctggttcctcccactgttcactccatacagcag
cagcagtgcagtgaaatagtggggacaatattacagtcactgtgtgaccaggacatttct
ctggtggtgtctccacccagtgaaagctgtttgtcagaggttgaacttctggccaatgca
ctacctgggcgagagatcatgtcatcagtgtgcaatgccttgttggaggttttgggaaat
gcagagagcagcgtcccacttctcctcacctgtatcaggactttgacattcctcacagag
cacgactacggactgtaccacctcaaagtagctctgaagaaacacagtgcggagctgtac
tcactgtttaagagattggtgtcttttaacaaggactcagcagacctgctctcagctctg
ctggacttcctcagacagatcctcaacacagaaacaatgtgtgttgaggagggccagggg
tctggtgaggagtctgccttcgctcctcctccacggttgctgactgcctctgagatgaaa
tctctgctgcagtgggaagagtccgagtcacatccactgccgactttagagaaacagatt
acggaactgtgtaaggaagatgattcactggagacgatgttggagaatgtgattgttttg
aggcagacgctggagacggccacagacacgcctcctgcagctgatactgagcccactctg
ccagcacctgagacacttggggcccagtttaatcacaggacggtgttcattctgtcagaa
gctctggacgagcagctgaaggctctgtggttctctcctttccaaactgatgacatagag
acagaccttgacatggtgaaggtggatctggtgggtttggctcaggagtgttgtccagaa
ctggacctgaagtcagagctggagcgctccttcctgtctgagccctcatctcctggtcac
acgaaagctacaaaaggctttcgactcggcaaacacaagcacgagacgttcattacatca
agcggtaaatcagactacgttgaacctgctaagagagcccacatcatggctgctccacgt
ggccgcggaggtcgaggaggttttggacaaaacctcaaccggccccatgatatcttccgc
cagcgcaaacagaacacttcccgtcctcccagtatgcatgtggatgactttgtggcagca
gagtttaaagacattacaacccctcttggtcttttaccccctaaacggccacctaagagc
tcccccaaaccccccaccagaggactgttcactggcaacagaggcagagccacctttcac
agccagacacgctttttcactccaccacaacctaaaggtgtactactgtctggtaattac
actcgcagagaaggccgaggttcatcgtggagtggccaagtcccagctgtcactcacaga
ggaacctacagtgaacctcgcggaggccagagcaacttcacacgtggacctctgccctcc
cgacaaccccctgcaagtgcatatcgcctggctccacgagatcgtgctccacgaggcagg
ggaggcaccgggctttcgtggctcagcgggggaggaggcggcggcagtgctggaggaggt
ggtgggggaggtggaggaggaggcagaggatctcaggggagcaagttcagtggcggggga
gggagcggaggtgggaggggcagacacgttcgctccttcaccaggtaa
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integrated database retrieval system
