Scomber japonicus (chub mackerel): 128367986
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Entry
128367986 CDS
T09718
Name
(RefSeq) interferon-induced very large GTPase 1-like
Organism
sjo
Scomber japonicus (chub mackerel)
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
RHD3_GTPase
ABC1
Dynamin_N
Kinase-like
MMR_HSR1
COG5_N
Aminotran_5
Motif
Other DBs
NCBI-GeneID:
128367986
NCBI-ProteinID:
XP_053184711
LinkDB
All DBs
Position
1:39361441..39380837
Genome browser
AA seq
1843 aa
AA seq
DB search
MDKYEQVKKIGKGGFGTVILVKSKEDGHQYVIKEIDISEMSTEETEKAQHEVEVLSKMSH
PNIVQYKESFEERSCLCIAMDYCEGGDLSEKIKSQRGKHFPEEQILDWFVQICLALKHIH
DRKILHRDIKPENVFLTKDGTVQLGDFGVARVLNSTGELATTCIGTPLYLSPEICAKTPY
NSKSDIWALGCVLNEMCTLKPVFEVEPWEQPYQKILRGSYPPLSDHYSQELRSLLNQLLN
CDPTERPSVSSILEEPFLCRRIQKFLTPKIIADEFGHDFLHRAALFYFLSKLGLEEFYPN
KLTLRSLLEINKNSIYDETVQSLEKIPWCFLRKLFQISAECRNCTQLSNDDEDGEENSDQ
FDFDQLIADDCDDNKVNPLDLIVALFLCADSFLQQEMALKMSVCQFSVPLLLPHVNNSQS
TLMLWALRDIVKEWCPQDLSESKGFVENNIVQANIPFFTFVRLKNCSLSKSQVLNHVLSR
GQQNHNIFIHRDMEGGRLQRIIANGLVEVCWYLPCGKENLDIFPEPVAFANLRGDICESL
AQFNFLFQVSTATFVFLDKVEENEHKILTSLQDVKSKLCLVVNRKEHSSGEDMMSVKKTL
KELKVPKSSVKTKDPSVNIAEFSKKLCAAIKTSLPDVKATLNIVNMVGKAAELGLFVDES
TSDKQNKAAEEILKGIGVRLIPDYKKQQLPLQGDNWKRLSQLQMEECRLKKSGELGLEEY
KSQLQEEKLQIRKEQNKYKLSKAMTSFIESLSTSDKEKRDFFLKWMKLKLDTHSRNKLSD
LRNKFKEQCEKKDIKLIAKLDKDLLESSLGVEHYMREMGLIYEFSVKGSRNIVDEITRLP
GLAAEMLLDGFPLELLDGDASNIPERWVTDVLMELHKKVGEQSKLLVLTVLGVQSTGKST
LLNTMFGVQFPVSSGRCTRGAYMLFLKVGKDMKRELNYDFIVLIDTEGLKSPDLAELEES
YVHDNQLATFVIGLSDVTIINIAMENSTEMKDVLQIAVHAFLRMKEIGKKPICHFVHQNV
SGVSAHAKTITERKHLLDQLNQMTQIAAEMEKKPSIKAFTDVLDYDMDKNNWNIPGLWHG
TPPMAPVNTGYSEAVADLKRNLLVKTNRSNGVPKIPEFLVWIRSLWKSVKYENFIFSFRN
TLVAQAYDNLCKEFSQWEWEFRKEILSWQKQAELEITNADNESNMETWNRLVESKKREVT
DKIKQQQTKMKEKLYKYYKRKDGHINLIEKYKADFSNSISSLANEITHSVNNKLDCALEL
KKSSKKVQDIQRKYRGVIEEQVMKLLTECKNQTLPEEQLENVFEKMWTEATKNVSGLEEQ
NISVSILKQLRKNFVNRNVNEELQNTGDLHEIGKEPLKVKSKHIKQGMIKGIINSIMKKD
AERDLQEFADSVIESCTRFVFDKAKSNSDYHDSFTRDLLEKIDEYFQQKRQKTNAKFEID
LKLHICGIASREFFRMHQKYLSGKDPRTQLEKYKSQYLSDFLDLYKQRDDCQRKADAFVK
CCIKPAVEDYINRSLGIDIVDDILTGSHSAEYSSRSFFQYNIQEELLQRDDFKSFVKYIC
NYEIYVKDWIFQHIQKKMSEGKTLCKLRNKNLQVIVDKITAALEQASKGPGGVQLPDNSE
RITELISNMRKYLIKDISISEEDEKTTLFQIKSTCHPFINSLKMSIEDLKEQLQEEFSKS
ENITETLNKLPIKPQDELFKRVFGCGKQCPFCKVPCEAGGKGHDKHHATVHRPQGLGRYR
NVYTEKLVETLCTTDVHGERKFRNSDTKWEFHPYKDYTKYYPDWHIPPDPSIEASDYWKY
VLVRYNDRFAQEYKAKPADVPDAWRRITKEQALKGLKDAYNIK
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggacaagtatgaacaggtgaagaaaattggaaaaggtggatttggaacagtaatcctt
gtgaaatccaaagaggatggacaccaatatgtcatcaaagagattgacatatctgaaatg
tcaactgaagagacagagaaagctcaacacgaagttgaagtcctttccaagatgagtcat
cccaacattgtccagtataaggaatcttttgaagagaggagctgtctgtgtattgcgatg
gactactgtgaaggtggagacctatccgagaagatcaaatctcagagaggaaaacatttc
ccagaagagcaaatcctggactggtttgtgcagatttgtctggcactaaaacacatccat
gatagaaaaatcctccacagggacatcaaaccagagaacgtatttttgactaaagatggg
actgtacagcttggggattttggagttgcaagagtgctgaacagcactggagaactagca
acaacatgcataggaacaccactttatctgtcaccagagatctgtgcgaagacaccatat
aacagcaaaagtgatatttgggcccttggctgtgtcctgaatgaaatgtgcactcttaag
cctgtatttgaggttgaaccttgggagcagccatatcagaagatccttcgtggctcatac
cctcctttgtctgatcactactcacaagaactgcgttccctcttgaatcagctgttgaat
tgtgacccaacagagagaccctcagtcagcagcatactggaggaacctttcctctgccgc
aggatacagaagttcctcacaccgaagatcattgctgatgaatttggccatgattttctt
cacagggcagcccttttctactttctctccaaacttggactggaggaattttatcccaac
aagctcactcttcgctctcttttggaaatcaacaaaaacagtatttatgatgaaactgtt
caatcactggagaaaataccatggtgctttctcaggaaactctttcaaatcagtgcagaa
tgcagaaactgtacacaattatcaaacgatgatgaagatggggaggaaaacagtgatcag
tttgactttgaccagctcattgcagatgactgtgatgacaacaaggttaaccctctcgac
ctcatagttgcactctttctttgtgctgacagcttcttgcaacaggaaatggccctcaag
atgtcagtgtgtcagttttctgtcccactgctgttgcctcatgtcaataacagtcagtct
actctgatgctgtgggctctgagagacatcgtcaaagagtggtgtccacaggatttgtct
gaatcaaaaggatttgttgaaaacaacattgtccaagcaaatataccattctttaccttt
gtcaggctgaaaaactgtagtctctccaagtcacaggtgttgaatcatgttctcagtcgt
ggccaacagaatcacaacatcttcatacacagagatatggaaggaggaagacttcaaaga
ataattgccaatggtttggtagaggtttgctggtaccttccctgtggcaaagaaaatctt
gacatatttccagaaccagttgcctttgccaatttgagaggagacatttgtgagtcactg
gcacaattcaattttctttttcaagtgtcaactgctacctttgtgttcctggacaaagtt
gaagaaaatgagcacaagattctgacttctcttcaagatgtgaaatccaaactctgcttg
gttgttaatcgcaaggagcacagctctggagaggacatgatgtctgtgaagaaaacactg
aaagaattgaaggtgccaaaaagcagtgtgaaaaccaaagacccaagtgtaaatattgca
gagttttcaaagaaactttgtgcagccatcaagacctcactgccagatgtaaaagccaca
ctgaacattgtcaatatggttggaaaagctgctgagcttggtctatttgtggatgaaagc
acaagtgataaacaaaacaaagcagctgaggagatactgaaaggaatcggtgtgaggttg
ataccagactacaagaaacaacaacttccattgcagggagataactggaaaagactatca
cagttacagatggaggaatgtagattgaagaaatctggcgaactaggactggaagaatat
aaatcacagctacaggaagaaaaactacaaatcaggaaggagcaaaacaaatacaaactg
tccaaagctatgacaagtttcattgaatccttatccacaagtgacaaagagaaacgagac
ttttttcttaagtggatgaaacttaagcttgatacacattcacggaacaaactgtctgat
ctgcgcaacaagttcaaagagcaatgtgagaaaaaagacatcaaactcattgcaaagtta
gataaagatttgctggaaagctcattaggagtagagcattacatgagagagatgggactc
atctatgagttctcagttaaaggctcaagaaacattgttgatgaaataactcgtctccct
ggtttggctgctgaaatgctgttggatggatttcctttagagctcttggatggagacgct
tccaacatcccagaaagatgggtgacagatgtgctgatggagcttcacaagaaggttgga
gaacagagcaaactattagtactgactgtgctgggtgttcaaagtacagggaagtcaaca
ctcctcaacaccatgtttggtgtgcagtttcctgtcagcagcggcagatgcacaagagga
gcttatatgctcttcctcaaagttggaaaggatatgaaacgtgagctgaactatgatttt
atagttctcattgacacagagggtctaaagtctcccgatctagcagaactagaagaaagt
tatgtgcatgacaatcagctggcaacttttgtgattggtttaagtgatgtcaccattatt
aacattgcaatggagaactcaacagaaatgaaagatgtcctgcaaattgcagttcacgcc
ttcctgagaatgaaggaaattggtaaaaagccaatttgtcattttgtgcatcaaaatgtt
tctggagtttcagctcatgcaaagacaataacagaaagaaagcatcttttggaccagctc
aatcaaatgacacaaattgctgctgaaatggaaaagaagccttctattaaagcattcaca
gatgtgctggactatgacatggacaaaaacaactggaacatcccaggactctggcatgga
acccctccgatggcaccagtgaacacaggttatagtgaagctgtagcagatttaaagaga
aaccttttggtgaaaacaaacagaagcaatggagtcccaaagatcccagagtttctagtt
tggattagaagtctctggaaatctgtgaaatatgagaacttcatctttagtttcagaaac
actcttgtggctcaggcctatgacaacctttgcaaagagttcagtcaatgggaatgggag
ttcagaaaagaaatcctctcctggcaaaaacaagcagagttggaaatcaccaatgctgac
aatgaatctaacatggagacttggaacagattggttgagtcaaaaaaacgtgaggtgacc
gacaaaataaaacagcaacaaactaaaatgaaggagaaactatacaagtattacaaaagg
aaagatggacatataaatctcattgagaaatacaaagctgacttttccaacagtatcagt
agtcttgcaaatgaaatcacacattcagtgaacaataaactggattgtgcacttgagctg
aaaaaaagttcaaaaaaggttcaagacattcagagaaagtacagaggagtgattgaagaa
caagttatgaaactcttgaccgagtgcaaaaaccaaacattgccagaagaacaactagaa
aatgtgtttgaaaagatgtggactgaagccactaaaaatgtgtctggcctggaagaacaa
aatatatctgtaagcatcctcaagcagttgagaaaaaactttgtcaatcgtaatgtcaat
gaggaattacagaacactggagacctacatgaaattgggaaggaaccactcaaggtcaaa
agtaaacatataaaacaaggaatgataaaaggcatcataaattctatcatgaaaaaagat
gcagaaagagatctgcaggagtttgctgacagtgtcattgagtcttgcacacgattcgtg
ttcgataaagcaaagtcaaactcagattaccatgactcttttacaagagatctccttgaa
aaaatagatgaatactttcaacaaaagcgtcagaaaactaatgcaaagtttgagattgac
ctgaaacttcacatttgtggcattgcctcaagggaattcttcagaatgcaccaaaaatac
ttgtcgggtaaagatcctcggactcagctggagaaatacaagagtcagtatttgtcagat
tttcttgatttgtacaaacagagagatgattgtcaacgcaaagcagatgcttttgtcaag
tgttgcatcaaacctgctgtggaagactacatcaatagatctttgggaatagacattgtg
gatgatattttgacaggttctcattcagcagagtacagctctcgctcctttttccagtac
aacattcaggaagagttgctgcaaagggatgacttcaagagttttgtcaagtacatttgt
aactatgaaatatatgttaaggattggatatttcagcacatccagaaaaaaatgtcagag
ggcaaaactttgtgcaaactgaggaacaagaaccttcaagtcatagttgataaaatcaca
gcagcattagagcaggcctcaaaaggaccaggtggtgttcaactgccagacaacagtgaa
cgcatcacagagctcatcagcaacatgcggaagtatttgattaaagacatctcaatttca
gaggaggatgaaaaaaccaccttgtttcaaatcaaaagcacatgtcatccatttatcaac
agcctcaaaatgtcaatagaagacttgaaagaacagcttcaggaagaattctcaaagtct
gaaaacatcactgagactctgaacaaacttccaatcaaaccacaggatgagcttttcaag
cgagtctttggttgtggaaagcaatgtccattttgtaaagttccctgtgaggctggagga
aaaggacacgataagcatcatgcaactgtgcatcgaccacaaggtcttggtagatacagg
aatgtatacactgagaagctggtggaaacactgtgtacgactgatgtacatggtgaacgt
aaatttcgaaactcagatactaaatgggagtttcatccttacaaagactacaccaagtac
tatccagactggcacattcctccagatcccagtatagaggcatctgactactggaagtat
gtactggtacgatacaatgacagatttgctcaagaatacaaggccaaaccagctgatgtt
ccagatgcctggaggagaatcactaaggaacaagcactgaaggggttaaaagatgcctac
aacataaagtga
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integrated database retrieval system
