Scomber japonicus (chub mackerel): 128371443
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Entry
128371443 CDS
T09718
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128371443 (supt6h)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128371443 (supt6h)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
128371443 (supt6h)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
128371443 (supt6h)
BRITE hierarchy
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Spt6_S1
S1
HHH_3
HHH_9
Tex_N
SH2
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
128371443
NCBI-ProteinID:
XP_053187739
LinkDB
All DBs
Position
13:15001325..15017815
Genome browser
AA seq
1747 aa
AA seq
DB search
MSDFIESEAEESEEEFEEKDLKPKKTQRFMEDDDEEEEENTEDQDEQGNLRGLIDDGDEE
AEEEEDQEKNRSGGGSDSEEEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKTLDDDEEDDDEKDLIADEIFHADGEGELEDGETADEPLPQQDDDEEGEDEESDIDDFI
VDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFADFDADAYDQGEEEEEDQDEEGW
DRPKKQTKRRQGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPAEDDE
LEEEAEWIFRHGFSTLTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQQFEV
PFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQKMQSFQFEQISADPD
KPLADGIRPLDTADMERLKDVQTLEELGDVYNHFLLYYGRDIPKMQNAAKAGKKRLKKIK
EETEDGDEEELEVEEEEEQKGPDLKLASRRDMYSICQSVGLDGLAKKFGLTPEQFGENLR
DSYQRHETEQFPAEPVELAKDYVCSQFSTPEAVLEGTRYMVAMQIAREPLVRHVLRQTFQ
ERAKINIKPTKKGKKEIDEAHFAYSFKYLKNKAVKELNGDQFLKMCLAEDEGLLTIDICI
DLIGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQMAKELKS
KLVAEAKESIVRSCCRRLYNWLKVAPYRPDQQVEEDDDLMDESQGKGIRVLGVAYAPSRD
TPVFCALINGEGEVVDFLRLPYFMKRRNAFREDEREKKNQDIENLKKFLSSKKPHVVAVA
GETRDAQMIMEDFKRTISELEQESALPAVGVELVDNELATLYMNSKKSEVDYRDYPPLLR
QAVSIARKIQDPLIEYAQVCSTDDDILCLKLHPLQEHVVKEDLLCALYCEFINRVNEVGV
DVNKAIAHPHTQSLVQYVCGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINC
AGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEE
ILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRVPNTEEVFN
MLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQDNFPELSE
VWNHFDSGSCPGQAIGVRSRLDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKID
IEKFSVDLTCRTSDLMDKANEWKLPKDTYYDFDTESEDQKHEEELKKKQQRTPYIKRVIA
HPNFHNISFNQAEKMMEALDQGDLIIRPSSKGENHLTVTWKVADGIYQHVDVREEGKENA
FSLGHTLWINSEEFEDLDEITARYIQPMASFARDLLGHKYFQECHGGSKEKMEELLVKTK
REKPTFIPYFISACKDLPGKFILGYQPRGKPRIEYVTITPDGFRYRSQIFPTVNGLFRWF
KDHYQEPVPGITPSNSSRTRTPASLNATPANINIADLTRAVNALPRNMTSQMFSAIAAVT
GQGQNPNTTPAQWGSSQYGYGGSTGGGGGGGSSSAYHVFATPQQPIATPMMTPSYSYTTP
SQQALGTPQYPGSTPQSSHSHAHPHGGHASHHSHHGHSSHHGHSSGTPSSSTSSRGRTPQ
QQPKPSSSNTSAVDWGKMAEQWLKEKEAEGRKKAQRMTPRPSPSPMIESTPMSIAGDATP
LLDEMDR
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacttcatagagagcgaggctgaggagtcagaggaagagtttgaagagaaagac
ctaaagcccaagaaaacccagaggtttatggaggatgatgatgaagaggaagaagagaac
acggaggatcaggatgagcaaggaaatttacgtggactgattgatgatggagatgaggag
gcagaggaagaggaagaccaagaaaaaaatcgaagtggaggtggcagtgactctgaagag
gaagttaggcatcgacgtaaaaagcgcaattatgacgactacctggatgatgatgatctt
gaccttattgaggaaaatttgggtgttaaagtgaaacgaaggaagaagaaatatgaccgt
gtgaaaacactggacgacgatgaagaagatgatgatgagaaggacttaattgcagatgaa
atcttccatgctgatggagagggcgagctggaggacggtgagactgccgatgaacctctt
ccgcaacaagatgatgacgaggaaggagaggatgaggagtcagatatagacgattttatt
gtggatgatgatggccaacccatcaccaaaaagaggggcaagaaattctcaggatacaca
gatgcagccctccaggaggcccaggagatttttggtggcgacttcgactttgctgacttt
gacgcagatgcctacgaccagggtgaggaggaggaagaggaccaggatgaagagggctgg
gacagacccaagaaacagaccaagaggaggcaagggaggaagagcatctttgagatctac
gagcccagtgagctggaaagtagtcacatgactgaccaagacaatgagatccgctccaca
gacatgcccgagaggttccagttaaggtccatccctgttaaacctgctgaagatgatgag
ttggaagaggaagccgagtggatcttcagacatggtttctccaccctaactatctccatg
caggagagcacagattatcttgacagagggaccaccacaaacttcagcaggaaaggcccc
agcacaattgccaagatcaaagaggctctcaacttcatgaggaatcaacagtttgaggtt
ccattcatagctttttacaggaaagaatatgtggagccagagctaaacatcaatgacctg
tggaaggtgtggcagtgggatgaaaagtggactcaactgaagacccgcaagcagaacctg
acccgtctgttccagaagatgcagtccttccaatttgagcagatctctgcagaccctgac
aaacctttagctgacggcatccgtcctctggacaccgctgacatggaaagactgaaagat
gtgcagacgcttgaagagctgggtgatgtgtacaaccactttctgctctactatggccga
gacattcccaagatgcagaatgccgctaaggccggcaagaagaggctcaagaagatcaaa
gaagagacagaggatggtgatgaggaggaattggaggtggaagaagaagaggaacagaaa
ggacctgacctgaagctggcgtctcgaagggatatgtacagcatctgtcagagcgtggga
cttgatggcctggctaaaaagtttgggttgactccagagcagtttggagaaaatctgaga
gacagttaccagcgtcacgagacagagcagttccccgctgagcctgtagagctggccaaa
gattatgtctgcagtcagttcagcactcctgaggctgtgctggaagggaccaggtacatg
gtggccatgcagattgctcgagaacctctggtcagacacgttctccgacagacctttcag
gagagggccaagatcaacatcaagcctacgaagaaaggcaaaaaggaaatagacgaggct
cactttgcctactccttcaagtatctgaagaacaaggctgtaaaagagctgaacggggat
cagttcttgaagatgtgcctggcagaggacgagggactgcttaccattgacatctgtata
gaccttatcggggtcaaagggttcgctggggaccagacatactttgatgagatcaaacag
ttttactacagggacgagttcagtcaccaggtgcaggagtggaacaggcagcgaacctta
gctatagagcgatctctcactcagttcctataccctcagatggccaaggagctcaagagc
aaactggtcgctgaggccaaggagagcattgtcaggtcctgctgtcgccggttgtataac
tggcttaaggtggctccttataggccagatcagcaggttgaggaagacgatgatctgatg
gatgagagtcagggcaaaggcattcgggtgcttggtgttgcctatgcacccagcagagat
actccagttttctgtgctctgatcaatggagaaggggaggtggtggacttcctgcgtctg
ccctacttcatgaaaaggaggaatgcgttcagggaggatgagagagagaagaagaaccag
gacattgaaaatctaaagaagtttctgtccagcaagaaacctcatgtggtagctgttgct
ggggagaccagagatgcccaaatgatcatggaggacttcaagaggactatcagcgagctt
gagcaagagtccgctctgccagctgtgggagtggaacttgttgacaatgaattggccaca
ctgtacatgaacagcaagaagtctgaggttgattatagggattaccctccattgctgcga
caggctgtgtcgatagctaggaagatccaggatcccttgatagagtacgctcaggtctgc
agcactgacgatgacattctctgcctcaaactgcacccactgcaggaacatgtggtgaag
gaggatcttctctgtgctctctactgtgaattcatcaatcgagtcaatgaggttggagtg
gatgtgaacaaggccatcgcccatcctcacactcagagcctggtccagtatgtttgcggt
ttgggaccaaggaagggctcccacctgctcaagattctaaagcagaacaacactcgtctg
gaaaacagaacccagctggtcacaatgtgtcacatggggcccaaggtttttatcaactgt
gctggtttcatcaagatcgacactgcatcgcttggagacagtactgactcctacattgag
gttctggatgggtctcgtgtccaccctgagacttatgagtgggcccgcaagatggctgtc
gacgcccttgagtatgatgagtcggcagaagacgccaacccagctggagctctggaggag
atcttggaaaatccggagcgtctcaaagatctggacctggatgccttcgctgaagagctc
gagagacagggttatggcaacaagggaattactctgtatgatattcgtgcagagttgagc
tgcagatataaagacctcagagttccctacagagtcccaaacactgaggaggtattcaac
atgctcaccaaggagactccagagaccttttatattggtaagctgatcaccagcgtagta
actggtattgctcaccggcggcctcagggagagagctacgaccaggccatccgtaacgac
tccacgggtctgtggcagtgtcccttctgtcagcaggacaacttcccagaactcagcgag
gtgtggaaccactttgacagcggttcctgtccaggtcaggctattggagtgcggtccaga
ttagataacggcgtccagggattcattcccaccaagtttctcagtgacaaagtggtcaaa
caccctgaggagagggtgaaggtgggcatgacagttcactgccgcatcatgaaaatcgac
attgagaaattcagtgtggatctaacatgccgcacctcagatttgatggacaaggccaac
gagtggaagctcccgaaggacacctactatgactttgacacagagtccgaagaccaaaaa
cacgaggaggagcttaagaagaaacagcaacgaacaccatacataaagcgtgtgatcgcc
caccccaacttccacaatatcagtttcaaccaggcagagaagatgatggaggccctagac
caaggagacttgattatcagacccagcagcaagggagagaaccacctcaccgtcacctgg
aaagtggctgatggtatctaccaacacgtggatgtgagagaagaaggcaaagagaatgca
ttcagcttagggcacactctctggatcaacagtgaagagtttgaagatctggatgaaatc
acggctcgctacattcagccaatggcatcatttgcccgagatctactggggcataagtac
tttcaggagtgccacgggggcagcaaggagaaaatggaggagttattggttaagacgaag
agggagaagcctacttttattccttactttatttcggcatgtaaagacctgccaggaaag
ttcatactgggctaccagcctcgtggaaaaccacgcattgaatatgtgaccatcaccccg
gatggcttccgttaccgttcacagatatttcctacagtgaatggtttattccgctggttt
aaggaccattaccaagagcctgttccaggcatcacgcccagcaacagcagtcgaacaagg
acacctgcatccctgaacgcaaccccagcaaatatcaacattgcagacttgacgcgagct
gtcaacgccctcccacgcaacatgacctctcagatgttcagtgccatcgctgcagtcaca
ggccagggccagaacccaaacaccacccccgcacagtggggatccagtcagtacggctac
ggtggcagcacaggaggaggaggaggaggagggagctcctctgcttatcatgtgtttgcc
acacctcagcagcccattgccacgcccatgatgacacccagctactcctacaccactccg
agccagcaggccctgggcacaccgcagtaccctggctccaccccacagtcctcacactct
cacgcccacccacacggaggccacgcatcacaccacagccatcacggccacagcagtcac
cacggccactcctcgggcacgccgtcatcctccacgtcatccagaggaaggacaccacag
cagcagccaaagccgagcagcagcaacacctctgcagtggactggggcaagatggcggag
cagtggctgaaggagaaagaagcagagggacggaagaaagcccagaggatgacgccacga
ccatcccccagccccatgatcgagagcacacccatgtccatcgccggagacgccacaccc
ctgctggatgaaatggatcgatag
DBGET
integrated database retrieval system
