Scomber japonicus (chub mackerel): 128378548
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Entry
128378548 CDS
T09718
Symbol
scn4ab
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128378548 (scn4ab)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128378548 (scn4ab)
BRITE hierarchy
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
CDC45
IQ
Motif
Other DBs
NCBI-GeneID:
128378548
NCBI-ProteinID:
XP_053194088
LinkDB
All DBs
Position
18:31220199..31238917
Genome browser
AA seq
1831 aa
AA seq
DB search
MAPLLPPLGTEIFRRFTPASLEEIQRRYEAEEQEQQRKKEKNIEVAEEDLPKPASDLEAG
KPLPFIYGDPPPELINTPLEELDPFYQSHKTFIVLSKGNTIFRFNADPACYLLSPFSRLR
IYSIRILIHSFIMLTILTNCVFMTMSDPPPWSKTVEYVFTGIYTFEASVKVMSRGFCVGD
FTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQ
SVKKMADVMILTVFCLSVFALIGLQLFMGNLRQKCVLMSPLLLGNHTSPGNLTTGYLGND
TSPSNLTTSYLGNNTYGNDTGSDFDFQEYIKNTENHYYLPGANDALLCGNSSDAGVCPEG
YTCLKVGRNPNYGYTSYDTFGWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVVIF
LGSFYLINLILAVVAMAYADQNEASIAEAKQKEEEYAQILEALKKREEVSXLSDPPHPQL
LINRRLYTALNKHINTAVSSCSLQLLSPAVVSSCCLXLLSPAAVSSCCLQLLSHCVSGYD
DDQRPCPPCWYAFSDIFLKWNCCGCWRWIKPWLYTIVMDPFVDLSITICIVLNTVFMAME
HYPMTPQFEELLSVGNLVFTGIFTAEMILKLLAMDPYYYFQVGWNIFDSIIVTMSLVELG
LANVQGLSVLRSFRLMRVFKLAKSWPTLSMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKDCVCRIAEDCELPRWHMNDFFHAFLIIFRVLCGEWIETMWDCMEVAGQTMC
LMVFMLVMVIGNLVVLNLFLALLLSSFSGENLAAPDEDGENNLQIAINRINRAVAWVTSW
VLEQFWTLLGKKDPDQSAADGDEDDRKEFLALSFVASDQPGSEVNALSCNHDDQPGSEVN
ALSCNHDDQPSNYHNIATLKVPIAEAESDFETPENDDDDEDDDDDEDDEDDDDDGDEEEE
NHSQCDESSLCSTVQRIPEVQEEDHDEEEDKNIPVDCCTEECYRCCPCLVIDTSQGRGKV
WSNFRRTCYSIVEHNYFESFIIFMILLSSGALAFEDVYLEQRRVIKTLLEYADQVFTYVF
VIEMILKWVAYGFKTYFTNAWCWLDFLIVDVSLVSLTANLLGFSELGAIKSLRTLRALRP
LRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNETAGE
SFHHEDVDNKTECLALIQMNFTEVRWKNTKVNYDNVGMGYLSLLQVATFKGWMDIMYAAV
DSREVESQPIYEDNLYMYLYFVCFIIFGSFFTLNLFIGVIIDNFNQQKAKLGGKDIFMTE
EQKKYYNAMKKLGSKKPQKPVPRPENKFQALVFDLVTQQPFDIFIMVLICLNMVTMMVET
DEQSPEKDRILYWVNLVFIVFFTIECTLKITALRHYYFAVGWNIFDFVVVILSIVGLLLA
DIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMF
IFSIFGMSNFAYVRKGAMIDDMFNFETFGNSMICMFMITTSAGWDGMLVPIMNTPPDCDP
NAEHPGTLVRGDCGSPGVGIVFFTTYIIMSFLVVVNMYIAIILENFNVATEESSDPLCED
DFEMFYEIWEKFDPDASQFIQYNKLSDFCDTLQDPLRIPKPNTIKLIHMDLPLVPGDKIH
CLDILLALTAQVLGDAGGMDALKASMEEKFMANNPSKVSYQPISSTLRRKQEEVAAKVIQ
RAYRKHLLQRTLKLASYKYREKTKGRRGEEPPPETEGLLCQRIHQLYGDEDGESPAPAAR
VELQSEFLLHAAPPLNMRDFLRDENLRESIV
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctctgctgccccctcttggtacggagatcttcagacgcttcacgccagcttca
ctggaagagatccaacgacgatatgaagccgaggagcaggagcaacagaggaagaaggag
aagaacatagaggtggcagaggaagacctgcctaagccagccagtgacctggaggctggt
aagcccctcccattcatctacggggacccgccccctgagctaatcaacaccccattggag
gagctggatcccttctaccaatcacataagaccttcatcgtgctcagtaagggaaacacc
atcttcaggtttaacgccgacccggcctgttacctgctgagtccgtttagccgtctgagg
atttactccatcaggatcctcatccactctttcatcatgttgacgattctgaccaactgt
gtgttcatgacgatgagcgaccctccaccatggagcaagactgtggaatacgtgtttaca
ggaatttacacttttgaagcttcagtgaaagtcatgtcgagaggattctgtgtgggagac
ttcaccttcctcagagacccctggaactggcttgacttcatggtcatcagcatggcatat
ctcacagagttcgtagatttgggaaatgtttctgctttgaggacgttcagagttcttcga
gcactaaaaaccatcacagtcatcccaggtttgaagacgattgtcggagctctcatccaa
tcagtgaagaagatggcggacgtcatgatcctgactgtgttctgcctcagcgtcttcgct
ctgattggtctgcagctcttcatgggaaacttgaggcaaaaatgtgtcctgatgtcgcca
ctgttgctcggcaaccacacgtctcccggcaacctcactactggttacctcggcaacgac
acgtctcccagtaacctcaccactagttaccttggcaacaacacctacggcaacgacaca
ggaagcgattttgatttccaagagtacatcaaaaatactgaaaaccattattacctcccc
ggagcgaatgatgctctgctgtgtggaaacagctcagacgccggggtctgtccggagggt
tacacatgtctgaaagttggcaggaatccaaactacggctacacgagctacgacacgttc
ggctgggcgtttctggctctgttcagactgatgacccaggactactgggagaacctgttc
cagctgactctgcgtgcggcaggtaaaacctacatgatcttcttcgtggtggtgatcttc
ctcggctcgttctacctcatcaacctgatcctggcggtggttgccatggcgtacgccgat
cagaacgaggcaagcatcgccgaggccaaacagaaggaggaagaatacgcccaaatcctg
gaggccctgaagaagagggaggaggtcagctaactgtccgacccaccacatccacaactg
cttattaacagacggctatacacagcacttaataaacacataaacactgctgtctccagc
tgcagtctccagctgttgtctccagctgttgtctccagctgttgtctctagctgttgtct
ccagctgctgtctccagctgctgtctccagctgttgtctcactgtgtttcagggtatgat
gacgaccagagaccgtgtcctccgtgttggtacgccttctctgatatcttcctgaagtgg
aactgctgtggctgctggcggtggatcaagccgtggctctacaccatcgtcatggacccg
ttcgtcgacctcagcatcaccatctgcatcgtgctgaacaccgtgttcatggccatggag
cattaccccatgacgccgcagtttgaggagctgctgagcgtcgggaacctggtgttcaca
gggatcttcacggctgagatgattctcaaacttctggccatggacccgtactactacttc
caggtgggctggaacatctttgacagcatcatcgtcaccatgagtctggtggagctggga
ttggccaacgttcagggtctgtcggtgctgcgctccttccgattgatgcgagtgtttaag
ctggctaagtcgtggccgactctgagcatgctgataaagatcatcggtaactcggtgggg
gctctggggaacctgacgctggtcctggccatcatcgtcttcatcttcgccgtggtcggc
atgcagctgttcgggaagagctacaaagactgcgtgtgccgcatcgccgaggactgcgag
ctgccccgctggcacatgaacgacttcttccacgccttcctcatcatcttcagggtcctc
tgcggcgagtggatcgagaccatgtgggactgcatggaggtggcgggtcagaccatgtgc
ctgatggtcttcatgttggtcatggtcatcggtaacctggtggtcctgaacctgttcctg
gctctgctgctcagctccttcagcggtgagaacctggcggctccagatgaagacggagag
aacaacctgcagatcgccataaatcggatcaacagggccgttgcctgggtgacgtcctgg
gtcctggagcagttctggactctgctggggaagaaggacccggaccagagcgcggccgac
ggcgacgaggacgacaggaaggagttcttggctttgagctttgtggcctcggaccagccg
gggtcagaggtcaacgctctcagctgtaaccatgacgaccagccggggtcagaggtcaac
gctctcagctgtaaccatgacgaccagccgagtaactaccacaacatcgccaccctgaag
gttcccatcgccgaggccgagtcggactttgagacgcctgaaaatgacgatgatgacgaa
gatgatgatgatgatgaagatgatgaagatgatgatgatgatggtgatgaagaggaagaa
aatcactcccaatgtgacgagtcgtcgctctgcagcaccgtccagaggatccctgaagtc
caggaggaagaccacgatgaagaggaggataaaaacatacctgtggactgctgcactgaa
gagtgctaccgctgctgtccgtgcctggtcatagacacgtcccagggccgagggaaggtc
tggtctaacttcaggagaacgtgttactccatcgttgaacacaactactttgagtctttc
atcatcttcatgatcctgctgagcagcggagctctggcgtttgaagacgtctacctggag
cagcgtcgggtcataaagacgttgctggagtacgccgaccaggtgttcacctacgtgttc
gtaatcgagatgattctcaagtgggtcgcctacggattcaagacctacttcaccaacgcc
tggtgctggcttgacttcctcatcgtagacgtgtctctggtgtctctgaccgccaacctg
ctgggattctctgagctgggagccatcaagtctctgaggacactgagagctctgaggcct
ctgagggccctgtctcgctttgagggcatgagggtggtggtgaacgcgctggtcggagcg
atcccgtccatctttaacgtgctgctggtgtgtctgatcttctggctgatcttcagcatc
atgggcgtcaacctgtttgcaggaaagtattattactgctttaacgagacggccggcgag
tcctttcaccacgaagatgtcgacaacaagaccgaatgtttggctctgattcagatgaac
ttcactgaggtccgctggaagaacacaaaggttaactacgacaacgtggggatgggctac
ctgtcgctgctgcaggtggccacgtttaaaggttggatggacatcatgtacgcagccgtg
gactccagagaggtggagtcccagcctatctacgaggacaacctgtacatgtatctgtac
ttcgtctgtttcatcatcttcggctctttcttcaccctcaacctcttcatcggagtcatc
atcgacaacttcaaccagcagaaagcaaagttggggggaaaagacatcttcatgacggag
gagcagaagaaatattacaacgctatgaagaaactgggctccaagaaacctcagaaaccg
gttccacgccccgagaacaagttccaggcgttggtgtttgacttggtgacccagcagccg
tttgacatcttcatcatggtgctgatctgtctcaacatggtgacgatgatggtggagacg
gacgagcagagtccagagaaagaccggatcctgtactgggtcaacctggtcttcatcgtc
ttcttcaccatcgagtgcacgctcaaaatcaccgcgctcagacattactacttcgccgtc
ggctggaacatcttcgacttcgtggtggttattctctccatcgtaggtctcctcctcgct
gacatcatagagaagtactttgtctcgcccacgctcttccgtgtgatccgattggctcgc
atcggtcgggtccttcgtctcattcgtggggcgaagggaatccggacgctgctcttcgcc
ctgatgatgtcacttcctgcgctcttcaacatcggcctcctcctcttcctcatcatgttc
atcttctccatcttcggcatgtcgaacttcgcctacgtgaggaagggcgccatgatagat
gacatgtttaactttgagacgttcgggaacagcatgatctgcatgttcatgatcacgacg
tcggcgggttgggacggcatgctggtccccatcatgaacacgcctccggactgcgacccc
aacgcggagcatccggggacgctggtcagaggagactgcggcagcccgggcgtgggcatc
gtcttcttcaccacctacatcatcatgtccttcctggtggtggtcaacatgtacatcgcc
atcatcctggagaacttcaacgtggccaccgaggagagcagcgacccgctgtgcgaagac
gacttcgagatgttttatgagatctgggagaagttcgaccccgacgcgtcacagttcatc
cagtacaataaactttcagatttctgcgacacgctgcaggatcctctcaggatccccaaa
cccaacaccatcaaactgatccacatggatctgcctctggttcctggagacaagatccac
tgtctggacatcctgctggcgctcactgcacaggtgctgggtgatgcaggagggatggac
gctctcaaagccagcatggaggagaagttcatggccaacaatccctcaaaggtgtcgtat
caaccaatcagcagcaccctgcggaggaaacaggaagaggtggcagcgaaggtgatccag
agagcgtacaggaagcacctgctgcagcggacgctcaaactggcgtcctacaaataccgc
gagaagacgaagggacggcgaggcgaggagccgcctccggagacagaaggtctcctctgc
caacgaatccatcagctgtacggagacgaagacggtgagagtccggctcctgctgcccgg
gtggagcttcagagtgagtttctcctccacgctgcgccgccactcaacatgcgtgacttc
ctgcgagatgagaacctgagggagtctatcgtctga
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integrated database retrieval system
