Scomber japonicus (chub mackerel): 128380888 Help Entry 128380888         CDS       T09718                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04510   Focal adhesion sjo04512   ECM-receptor interaction sjo04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sjo00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128380888 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128380888 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128380888 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sjo00536]     128380888 (col1a1b) Glycosaminoglycan binding proteins [BR:sjo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128380888 (col1a1b) BRITE hierarchy Motif Pfam:  Collagen COLFI VWC TILa Motif Other DBs NCBI-GeneID:  128380888 NCBI-ProteinID:  XP_053196740 LinkDB All DBs Position 20:8318007..8338566 Genome browser AA seq 1450 aa AA seqDB search MFSFVDIRLALFLSVTVLLVRGQGEDDSTFGSCTLEGQLYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTSDCADPIIPDGECCPICPDTDGPPPPEPTETVVGPPGPVGDDGPPGYPG NDGIPGQPGPPGPPGPPGPPGLGGNFSPQMSYVDQSKSSGPPVPGPMGPMGPRGPPGPPG SSGPQGFTGPPGEPGEPGASGPMGPRGPSGPLGKNGDDGEAGKSGRPGERGPAGPQGARG FPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEAGGSGENGVPGAMGARGLPGERGRPG PAGPSGARGNDGNTGAAGPPGSTGPAGPPGFPGGAGAKGETGPQGGRGSEGPQGARGEPG NPGPAGPAGAAGAPGSDGVPGAKGSSGAPGIAGAPGFPGARGPAGAQGAIGAPGSKGNTG DHGPSGPKGEPGSKGEPGPAGLQGLAGPSGEEGKRGARGEPGGSGARGPPGERGAPGARG FPGADGAAGTKGAPGERGAPGPLGPQGATGEAGSSGAPGAPGSKGMTGSPGSPGPDGKAG PAGAPGQDGRSGPAGPTGSRGQPGVMGFPGAKGPAGESGKPGERGPSGATGAVGAPGKDG DLGAPGPSGPAGPAGEKGEQGSAGPPGFQGLPGPQGSTGETGKPGEQGAPGEGGPPGPSG PRGDRGFPGERGAPGINGPAGVRGAPGPAGNDGAKGEAGAAGAPGAQGAPGMQGMPGERG ASGLPGAKGERGDAGGKGADGAVGKDGVRGMTGAIGVPGPPGAQGEKGEPGAVGTPGPSG PRGGPGERGETGPSGPAGFAGPPGADGQPGAKGESGDTGAKGDAGAPGPGGPVGASGPQG PAGPPGSKGARGGAGPPGATGFPGPAGRVGPPGPAGAGGPPGPLGPVGKDGPRGARGETG PAGRPGEAGASGAPGPSGDKGSPGSDGPAGPSGAPGTSGLAGQRGNVGLPGQRGERGFPG LPGTSGEPGKQGSVGAVGERGAPGPAGPPGLSGATGESGREGSQGHDGAPGRDGAPGPKG DRGETGLAGPPGPPGTPGAPGAVGPSGKTGDRGEAGTAGPAGPSGPAGVRGPAGPAGGKG DRGEAGEAGERGHKGHRGFTGMQGLPGTGGPAGERGPAGANGPAGPRGPAGSSGSPGKDG MNGLPGPIGPPGPRGRNGEMGPSGPPGPPGPAGPPGPPGGGFDFVSQPLQEKAPDPFRGG HYRADDPNLMRDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGSF WVDPNQGSPLDAIKVHCNMETGETCIYPSQSSIAKKNWYRSKNIREKKHVWFSESMTGGF QFQYGSDGADFEDVNIQMTFMRLMSNQASQNVTYHCKNSIAYMDSTSGNLKKALLLQGSN DVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEF GVEVGPVCFL NT seq 4353 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgtttctcagcgtgacagtgcttttggtg agaggacaaggcgaggatgatagcacattcggcagctgcacattagagggacagttgtac aacgataaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagtggaacc gtcatgtgcgacgaggtgatctgtgaggacacatccgactgtgctgatcccatcatccca gacggagagtgctgccctatctgccccgacactgatggacccccgcctcctgaacccaca gagactgtggtgggacctcctggccccgtaggagatgatggtcctcctggttatcctggc aacgatggaatccccggacaacctggtcctcctggcccacccggcccccctggcccccct ggccttggcggaaacttctctcctcaaatgagctatgtcgaccaatccaaatctagcggc ccacctgtccctggccccatgggtcctatgggtcctcgtggtccccctggaccccctggc tcctctggtcctcagggtttcactggaccccctggtgagcctggtgagcccggagcttct ggtcccatgggtccccgtggtccatctggcccccttggaaagaacggagatgatggtgag gctggaaagtctggacgccctggtgagcgtggacctgctggccctcagggtgctcgtgga ttccccggaacccctggactccctggcatcaagggacacagaggattcagcggtctggat ggagctaagggagatgctggacctgctggccccaagggagaggctggtggatctggtgag aatggtgtccccggtgccatgggtgctcgtggtcttcctggtgagagaggccgtcccgga cctgccggcccatctggtgctcgtggtaacgatggcaacactggtgctgctggaccccca ggatctaccggacctgctggtcctcctggattccccggtggtgctggtgctaagggagag accggtcctcagggaggccgtggatccgagggaccccagggagcccgtggtgagcctggt aacccaggacctgctggacccgctggggctgctggtgcccctggatctgatggtgttcct ggtgctaagggttcttctggtgctcctggtattgctggtgctcctggtttcccaggtgct cgtggtcctgctggagctcagggagctattggtgctcctggttccaagggtaacactggt gaccatggaccttctggacctaagggagagcctggttccaagggagagcctggtcccgct ggacttcagggacttgctggcccctctggtgaggagggcaagagaggagctcgcggagag cccggtggctctggagcccgtggaccccctggagagcgcggtgcccctggtgctcgtggt ttccctggtgctgatggagctgctggtaccaagggagcccctggtgagcgtggtgcccct ggcccacttggacctcagggagcaactggtgaggctggaagctccggtgcccctggtgct cctggatcaaagggtatgactggtagccctggaagccctggccctgatggcaaagctgga cctgctggtgctcctggacaagatggacgctctggacctgctggccctactggttccaga ggacaacctggagtcatgggattccccggagccaagggacccgctggtgagtctggtaag cctggtgagagaggtcccagtggagctactggcgctgttggtgcccctggcaaagatggt gatcttggtgctcctggaccttctggccctgctggacctgctggagagaagggagagcag ggatctgctggtcctcctggattccagggtctccctggaccccaaggttcaactggtgag actggcaagcctggtgagcagggtgctcctggtgagggtggcccccctggcccatctgga ccaagaggcgacagaggtttccctggtgagcgtggtgcccctggcattaatggccccgct ggagtccgtggtgctcctggccctgctggtaacgatggagctaagggagaggctggtgct gctggtgcccccggtgctcagggagcccctggtatgcagggaatgcctggtgagcgtgga gcctctggtctccccggagccaagggagagaggggtgatgctggtggtaagggagctgat ggtgccgttggcaaagatggcgtgcgtggtatgactggtgctatcggagtccctggacct cctggtgctcagggcgagaagggtgagcctggcgctgttggaactcctggacccagtggt ccccgtggtggacctggtgagcgtggagagactggtccttctggacctgctggatttgct ggacctcctggtgctgatggtcagcctggtgccaagggagagtctggtgatactggagcc aagggagatgctggtgctcctggacccggtggacctgttggagcttctggtcctcaggga cctgctggtcctcctggatccaaaggtgctcgtggtggtgctggacctcctggtgctact ggtttccctggacctgctggcagagttggaccccctggccctgctggagctggtggaccc cctggacctcttggacccgttggcaaagatggacccagaggagctcgtggtgagactggc cctgctggtcgccctggtgaggctggtgcttctggagccccaggaccctctggagacaag ggatctcctggctctgatggacccgctggtccctctggtgcccctggaaccagtggtctt gctggacagcgtggtaatgtaggtctgcctggacagcgtggagagcgtggtttccctggt ctgcctggcacatcaggtgaacctggaaagcagggatctgttggagctgttggtgagcgt ggagcccctggaccagctggacccccaggactgtctggtgccactggagagtctggtcgt gagggatctcaaggtcatgatggtgcccctggtcgcgatggagctcctggccccaaggga gaccgtggtgagactggtttggctggaccccctggacctcctggtactcctggtgcccct ggagctgttggcccctctggcaagactggtgaccgtggagaggctggtactgctggtcct gctggtccttccggtcctgctggtgttcgcggtcctgctggccctgctggtggaaaggga gacagaggagaggctggtgaggctggagagagaggccacaagggacacagaggattcact ggcatgcagggtctgcctggaactggtggacctgctggagagagaggacctgctggtgcc aatggacctgctggacctagaggacctgccggatctagtggatcccctggtaaagatggc atgaacggtctgcctggacccattggaccccctggacctcgtggtcgcaatggagagatg ggaccttctggtcctcctggacctcctggacctgccggcccccctggacctcccggaggt ggatttgactttgtcagccagcctcttcaggagaaggcccctgatcccttccgtggtggc cactaccgtgctgatgaccccaacctgatgcgcgatcgcgacatggaggttgataccact ctcaagaccctgactcagaaggttgagaagatccgcagccccgacggtacccagaagagc cccgcccgcatgtgccgtgacctgaggatgtgccaccccgagtggaagagcggctcattc tgggtcgatcccaaccagggctctcctctggatgccatcaaggttcactgcaacatggag actggagagacttgcatctacccaagccagtccagcattgccaagaagaactggtaccgc agcaagaacatcagagagaagaagcacgtctggttcagcgagtccatgaccggtggattc cagttccagtatggcagtgatggagccgatttcgaggacgtcaacatccagatgaccttc atgcgcctgatgtccaaccaggcctctcagaacgtcacataccactgcaagaacagcatt gcctacatggactccacctccggcaacctgaagaaggctctgcttctccagggctctaat gatgttgagatcagagccgagggcaacagtcgtttcacatacagcgtcagcgaagatggc tgcacgtcacacactggcacatggggcaagacagtcatcgactacaagacatcaaaaaca tcccgcctgcccatcattgacattgctcctatggatgttggtgcccctgatcaggaattt ggcgtcgaagttggccccgtttgcttcttgtaa

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