Sphingobium indicum UT26S: SJA_C1-12900
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Entry
SJA_C1-12900 CDS
T01201
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SJA_C1-12900 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-12900 (lig)
Enzymes [BR:
sjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SJA_C1-12900 (lig)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SJA_C1-12900 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAI96124
NITE:
SJA_C1-12900
UniProt:
D4Z0J2
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Position
1:1275109..1277598
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AA seq
829 aa
AA seq
DB search
MADADPLSAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD
LEKGHLHFILHGERMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR
SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLPAEIAAMNLPGAL
IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA
LLGEGAAHVHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ
EFVIVGWTLSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA
ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTP
EAQSSIQISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER
PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP
EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS
VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgccgatccgctcagcgcctataaccgcaagcgcgatttcagccggactcgc
gaaccggcgggcaggcgcggccgcaggcagggcaatggcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgatttccgcctggaaatggacggcgtgcttaagagctgggcg
gtgacgcgagggcccagcatcgatcccgcggacaagcggctggccgtccgaaccgaggat
cacccgctgtcctatgcgacgttcgaggggacgatccccaagggcgaatatggcggtggc
acggtcatgctctgggacgagggcacctgggagccggtccccggcaagagcgcgagcgac
cttgagaaagggcatctccacttcatcctgcacggcgagcggatgcgcggcgaatggctg
ctgatccggctgaagccgcgaggtcgggaaaagagggaaaactggctgctgcgcaagatc
gaggatgcccatgccggcagcgctgacgatcttatcgcccgcaatctgacaagcatcagg
agcggccgcaccatggcggaaatcgcggcgggcgcgccggccatttcgctgaaggggaag
aagggaaaggccttcgacgcggcgatggcgcaggccgaccgggccgtcccggcgaagagg
cgcgccagggcgggatcggaccgcccgccgcccttccagccgccgcaactggcgaccctg
gtcgacgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggctatcgc
tgcctggtttcggcatcgggcgggaaggtcaggattttcacgcggtccggcctcgactgg
acggatcgcttcgcgcccctccccgccgaaatcgcggcgatgaacctgcccggcgccctg
atcgatggggaggtcgtcgcgctcggcagcgatggaaatccggatttctccacgctccag
cagctgttgaagggggaggggaaggcggcgctgcacctgttcgccttcgacctgctccaa
ctggacgggcaggatctgaccgccatgcccaatatcggccggaaggaaaagctggccgcc
ctgttgggcgaaggtgccgcgcatgtccatgtcggggaccatgtcgtcggggcgggggaa
aggctgttccaggccatgtgcggcgcggggcaggaggggatcatttcaaagcgcgccgac
gccccctatcgcggcgcgcgcacgaagaattggctgaaggtcaaatgcacccgccgccag
gaattcgtcatcgtcggctggaccctgagcggcgccagcgggcgctccatccgcaacctg
ctgctcggccagcgggagggggaggggctggtctatgcgggaaaggtcggcacgggcttc
aacgcggccaacagcgccgggctggtcgcggcgctcggcaagcgggggcgcaagaccgcc
gcgctcagcgtgccgcgcagcgaaagccggggcgcccaatgggttcgccccgatctggtc
gcggaaatcgcctttgccgaattcacggcggaaaatatcgtccgccatgccagcttcctg
ggcctgcgcgaggacaaggcggccagggaggtgcgacgcgaggaagccatgccgacgcct
gaagcccaaagttcgatccagatcagcaatcccgaccgcctgatcttcccggaggcgaag
atcaccaagggcgagcttgccgaatattacgcccgcatgggcgcggcgatgctgccctgg
atagcccgtcggccgatcagcctggtccgctgtccgcagggccgcgcgaagaaatgcttt
ttccagaagcatgacagcggcagtttcggcgaccatgtcaaacatgtcccgatccgcgag
aaggaggggaatgaggaggattatctttatatagaggatagcgatggcctgttggcctgc
gtccagatgggggcgatcgaatttcacggctggggttcgggcgtcgcggatgtcgagcgg
ccggatcgcatgatcttcgacctcgatccggacgaagggctggacttcgaggatgtgaag
aaggcggcgcgggacatccgccgggcgctggaggatatgggccttgccagcttcgccatg
ctgtcgggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaatggccg
gaggtcaaggatttcgctgaccgcttcgcccgtgccctcgccgcccaggaaccggatcgc
ttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactggctgcgc
aaccagcgcggcgccacggcggtgctgccctatgtggtgcgcgcccgcgagcttgcgtcc
gtcgccgcccccgtcacctgggaagagttggacgggatcgagagcgcggcgcacttcacg
gtgaaggacgccgccctcctgctcgaccgcgcctcctcgcgagacttgcgcggctggggg
gaagcgcaccagccgctgcccgctcattag
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