KEGG   Sphingobium japonicum: SJA_C1-12900Help
Entry
SJA_C1-12900      CDS       T01201                                 

Gene name
lig
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sjp  Sphingobium japonicum
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sjp00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SJA_C1-12900 (lig)
Enzymes [BR:sjp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SJA_C1-12900 (lig)
DNA repair and recombination proteins [BR:sjp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SJA_C1-12900 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
NITE: 
UniProt: 
LinkDB All DBs
Position
1:1275109..1277598
Genome map
AA seq 829 aa AA seqDB search
MADADPLSAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD
LEKGHLHFILHGERMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR
SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLPAEIAAMNLPGAL
IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA
LLGEGAAHVHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ
EFVIVGWTLSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA
ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTP
EAQSSIQISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER
PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP
EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS
VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggccgatgccgatccgctcagcgcctataaccgcaagcgcgatttcagccggactcgc
gaaccggcgggcaggcgcggccgcaggcagggcaatggcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgatttccgcctggaaatggacggcgtgcttaagagctgggcg
gtgacgcgagggcccagcatcgatcccgcggacaagcggctggccgtccgaaccgaggat
cacccgctgtcctatgcgacgttcgaggggacgatccccaagggcgaatatggcggtggc
acggtcatgctctgggacgagggcacctgggagccggtccccggcaagagcgcgagcgac
cttgagaaagggcatctccacttcatcctgcacggcgagcggatgcgcggcgaatggctg
ctgatccggctgaagccgcgaggtcgggaaaagagggaaaactggctgctgcgcaagatc
gaggatgcccatgccggcagcgctgacgatcttatcgcccgcaatctgacaagcatcagg
agcggccgcaccatggcggaaatcgcggcgggcgcgccggccatttcgctgaaggggaag
aagggaaaggccttcgacgcggcgatggcgcaggccgaccgggccgtcccggcgaagagg
cgcgccagggcgggatcggaccgcccgccgcccttccagccgccgcaactggcgaccctg
gtcgacgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggctatcgc
tgcctggtttcggcatcgggcgggaaggtcaggattttcacgcggtccggcctcgactgg
acggatcgcttcgcgcccctccccgccgaaatcgcggcgatgaacctgcccggcgccctg
atcgatggggaggtcgtcgcgctcggcagcgatggaaatccggatttctccacgctccag
cagctgttgaagggggaggggaaggcggcgctgcacctgttcgccttcgacctgctccaa
ctggacgggcaggatctgaccgccatgcccaatatcggccggaaggaaaagctggccgcc
ctgttgggcgaaggtgccgcgcatgtccatgtcggggaccatgtcgtcggggcgggggaa
aggctgttccaggccatgtgcggcgcggggcaggaggggatcatttcaaagcgcgccgac
gccccctatcgcggcgcgcgcacgaagaattggctgaaggtcaaatgcacccgccgccag
gaattcgtcatcgtcggctggaccctgagcggcgccagcgggcgctccatccgcaacctg
ctgctcggccagcgggagggggaggggctggtctatgcgggaaaggtcggcacgggcttc
aacgcggccaacagcgccgggctggtcgcggcgctcggcaagcgggggcgcaagaccgcc
gcgctcagcgtgccgcgcagcgaaagccggggcgcccaatgggttcgccccgatctggtc
gcggaaatcgcctttgccgaattcacggcggaaaatatcgtccgccatgccagcttcctg
ggcctgcgcgaggacaaggcggccagggaggtgcgacgcgaggaagccatgccgacgcct
gaagcccaaagttcgatccagatcagcaatcccgaccgcctgatcttcccggaggcgaag
atcaccaagggcgagcttgccgaatattacgcccgcatgggcgcggcgatgctgccctgg
atagcccgtcggccgatcagcctggtccgctgtccgcagggccgcgcgaagaaatgcttt
ttccagaagcatgacagcggcagtttcggcgaccatgtcaaacatgtcccgatccgcgag
aaggaggggaatgaggaggattatctttatatagaggatagcgatggcctgttggcctgc
gtccagatgggggcgatcgaatttcacggctggggttcgggcgtcgcggatgtcgagcgg
ccggatcgcatgatcttcgacctcgatccggacgaagggctggacttcgaggatgtgaag
aaggcggcgcgggacatccgccgggcgctggaggatatgggccttgccagcttcgccatg
ctgtcgggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaatggccg
gaggtcaaggatttcgctgaccgcttcgcccgtgccctcgccgcccaggaaccggatcgc
ttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactggctgcgc
aaccagcgcggcgccacggcggtgctgccctatgtggtgcgcgcccgcgagcttgcgtcc
gtcgccgcccccgtcacctgggaagagttggacgggatcgagagcgcggcgcacttcacg
gtgaaggacgccgccctcctgctcgaccgcgcctcctcgcgagacttgcgcggctggggg
gaagcgcaccagccgctgcccgctcattag

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