Streptomyces koelreuteriae: KJK29_05425
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Entry
KJK29_05425 CDS
T09603
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KJK29_05425 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skg03400
]
KJK29_05425 (ligD)
Enzymes [BR:
skg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KJK29_05425 (ligD)
DNA repair and recombination proteins [BR:
skg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KJK29_05425 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QWB22059
LinkDB
All DBs
Position
complement(1218330..1219259)
Genome browser
AA seq
309 aa
AA seq
DB search
MSGGDGTRGVRAGRRTVTVHRPDKVLFPGGAHAKEYTKGDLVDYHRAVAPFMLPHLRGRP
LMLERHPDGLDGPRFMQKNTPEHYPEWIRRVELAKEGGTVCHTVCDDTATLLYLVDQASI
ALHRWLSRADSADHPDRLVFDLDPAGDDFEAVREAARLLGELLDELELPSALMTTGSRGL
HAIVPLNGRHDFDEVRAFAHDVAETLAGAHPDRLTTAARKKDRGGRLYLDVQRNAYAQTA
VAPFTVRPRPGAPVATPITWDQLDDPELHARGWTIADAVEQARTNPWSGLLSRGRALGPA
RRRLNALRG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcggcgacggcacgcgcggggtgcgggcgggccgtcgcaccgtgacggtccac
cggccggacaaggtgctcttccccggtggcgcgcacgcgaaggagtacaccaagggcgac
ctggtggactaccaccgggccgtcgcgcccttcatgctgccgcacctgcgcggccgtccg
ctgatgctggagcggcatcccgacgggctcgacggcccgaggttcatgcagaagaacacc
ccggagcactacccggagtggatcaggcgcgtcgagctggccaaggagggcggcaccgtc
tgccacaccgtctgtgacgacaccgccaccctcctctatctcgtcgaccaggcgagcatc
gccctgcaccgctggctgtcccgcgccgacagcgccgaccaccccgaccggctggtcttc
gacctcgaccccgcgggcgacgacttcgaggccgtgcgcgaggccgcccggctgctcggg
gagctcctggacgagctggagctgccctcggcgctgatgaccaccggctcgcgcggactg
cacgcgatcgtgccgctgaacggccggcacgacttcgacgaggtgcgcgccttcgcccac
gacgtcgccgagaccctcgcgggcgcccaccccgaccggctcaccaccgccgcccgcaag
aaggaccgcggcgggcggctctacctcgacgtgcagcgcaacgcctacgcccagaccgcc
gtcgcccccttcacggtccggccccggccgggcgcgcccgtcgcgacccccatcacctgg
gaccagctggacgacccggagctgcacgcccgcggctggaccatcgccgacgccgtcgag
caggcccgcaccaatccctggtcagggctgctcagccgcggccgggcgctcggaccggcc
cggcggcggctgaacgctctgcgcggctga
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