Saccoglossus kowalevskii (acorn worm): 100370010
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Entry
100370010 CDS
T04123
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03015
mRNA surveillance pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100370010
09123 Folding, sorting and degradation
03018 RNA degradation
100370010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100370010
03041 Spliceosome [BR:
sko03041
]
100370010
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100370010
mRNA cycle factors
Stress granule specific factors
100370010
Spliceosome [BR:
sko03041
]
Complex C
Other components
Complex C specific factors
100370010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100370010
NCBI-ProteinID:
XP_002733794
LinkDB
All DBs
Position
Un
AA seq
655 aa
AA seq
DB search
MNPSGPSYPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS
AFGDILSCKVVCDENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERY
DAMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFE
DPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVK
NLDDSLDDERLRKEFMPFGTITSAKVMSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVS
TKPLYVALAQRKEDRKAHLASQFMQRMSGLRLPGQAQMGQMYQSNVSAYFPQTVPQTQRG
FFAAPTQVAQVRASPRWPQSSQPRPAQASAGFQSMPNAAAAQFRAGTPRTATSNVRPVTP
AGRGVPQPPTAAQRVAGVMPGQQQAAAAAAAAAQRGVPSAQPRASYKFTTTMRNPPPQIP
NQQQSALSQQTPQQSVQVPGQEPLTSSMLAAAPPQEQKQMLGERLFPLIQLTHGELAGKI
TGMLLEIDNSELLHMLESRESLNAKVEEAVAVLKAHQAKETTVKPGTEIKPPSLQ
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttcaggtccaagttatcctatggcatctctatacgtcggagatctccacaac
gatgtcactgaagccatgttattcgagaaattttcatcggcgggtcctatcttgtcgatc
agagtttgccgggatatgatcactcgtcgttctctaggttatgcatatgtcaatttccaa
cagccggcagatgctgaacgagcgcttgattcaatgaactttgatgtaatcaagggacgg
cccattcgtattatgtggtcacagcgtgatccttcacttcgaaagtctggtgttggcaat
gtgttcatcaagaatcttgacaaatcaatagacaacaaagctatgtatgatacattctct
gcctttggtgatattctttcatgtaaggtggtttgtgatgaaaatggttctaaaggttat
ggatttgtacattttgctacagaagaagctgcaaacaaatcaatagaaaaagtaaatggc
atgttactgaacgggaaaaaagtatatgtaggtaaatttatgtcccgcaaagaacgttac
gatgccatgggtggacaacaaaagaaattcaccaatgtatttgtaaaaaactttggtgat
gaattagatgatgaaggtctgagagaaatgttcgaaagatatggtaagattgtcagtcat
aaagtgatgcaggatgatcacagtggtagaaataaaggatttggctttgtctgctttgaa
gatccaattgatgctgaaaacgcatgtgatgacttgaatatgaaagacataaatggtcgt
attctctacgttgggagagctcaaaagaaaatagaacgccaggcagaattacgcaataga
tttgagttgatgaaagctgaacgtgctaatcgctaccagggtgttaacttgtatgtaaag
aatcttgatgactcgctagatgatgaacgtcttcgtaaagaattcatgccttttggcaca
attactagtgctaaggtgatgtcagaaggtggacgatctaaaggatttggatttgtgtgt
ttctcctctccagaagaggctacaaaagcagttactgaaatgaacggacgtatcgttagc
actaaaccattgtatgttgcattagcacaaaggaaagaggatcgtaaagctcatttggct
tcacagttcatgcagcgcatgtctggacttagacttcctggacaagctcagatgggtcaa
atgtatcagtcaaatgtatctgcctactttccacaaacagtacctcaaacacagagggga
ttctttgctgctcctacccaagtagctcaagtgagagctagtccacgctggccacaatct
tcacagcctagaccagcacaagcatcagcaggtttccagtcaatgccaaatgctgcagct
gctcagttccgtgcaggaactcccagaactgcaaccagtaatgtgagaccagtaacacca
gctggtagaggtgttcctcaaccacccacagcagctcaaagggttgctggtgtaatgcca
ggacaacaacaagctgctgctgcagcggctgctgctgcccagcgtggagtgccttctgca
cagcctagagcaagttacaaattcactactacaatgagaaatccaccacctcagatacca
aaccaacagcagtctgctctatctcagcaaactcctcagcaatctgtacaagtgcctggt
caggaaccattgacatcatctatgttagctgctgctccaccacaagaacagaagcagatg
ctgggtgaacgtctctttccgctgattcagctgactcacggtgaattagccggcaaaatc
actggtatgttattggagattgacaactctgaattgcttcacatgttggaatcaagagaa
tctctcaatgcaaaggttgaggaagctgtggctgtattgaaagcacatcaagccaaggag
accactgtcaagcctggcactgaaataaaaccacctagtcttcagtaa
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integrated database retrieval system
