KEGG   Sphingomonas koreensis: BRX40_03900
Entry
BRX40_03900       CDS       T04828                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
skr  Sphingomonas koreensis
Pathway
skr03030  DNA replication
skr03410  Base excision repair
skr03420  Nucleotide excision repair
skr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:skr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BRX40_03900
   03410 Base excision repair
    BRX40_03900
   03420 Nucleotide excision repair
    BRX40_03900
   03440 Homologous recombination
    BRX40_03900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:skr03032]
    BRX40_03900
   03400 DNA repair and recombination proteins [BR:skr03400]
    BRX40_03900
Enzymes [BR:skr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BRX40_03900
DNA replication proteins [BR:skr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BRX40_03900
DNA repair and recombination proteins [BR:skr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BRX40_03900
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BRX40_03900
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 DprA_N HHH_2
Other DBs
NCBI-ProteinID: APR51693
UniProt: A0A1L6J6W5
LinkDB
Position
complement(779164..781929)
AA seq 921 aa
MPHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLADELHKADGPTHMAVI
LDKSEHTFRNEMYDQYKAHRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGWEADDLIASY
TKAALAQGWQVTIVSSDKDLMQLMTDPSVDMLDTMNNRRLGPKDTEEKFGVLPEKLGEVL
ALMGDSVDNVPGVKGIGPKTAAKLIQEFGTVDAVLEAAPSMKPSKMRDNLIEYADMARLS
RKLVELASDVPLPDPLDELELKGIPDAPLRAFLEHHGFKTLLSRLGGGASVADAPVASPE
PVPMPDDPPCDHDGYETVVDEAALERWILAAKHQGWVAIDTETTGVDATRAELVGVSMAL
EPNRACYIPVGHGGTDMFAEKPVQLDRNLVIAKLKPLLEDPSVLKIGHNIKYDLIVLSRA
GIDVAPYDDTIVMSFDLDAGLHGHGMDELAATHLSHTCIAYKDVVGSGKKQLGFQEVDLK
AATRYAAEDADVTLRLWRRLKPRLPFEGSTRVYEMVDRPLARVIADMELAGVKVDAGVLA
KLSDDFSRQIAALEEEIHGIAGFKFTIGSPKQLGDVLFDKMGIKGGRKGKSGVYSTDVNE
LERIAADKDSPGREMVLKVLDWRQLTKLKSTYTDALQAQINPATGRVHTSYSLTGAQTGR
LSSTDPNLQNIPVRTEVGRQIRDAFVAEPGNVILSADYSQIELRLAAHIADVPQLREAFE
RGDDIHNMTATELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVTPDEAQAMIDRYF
ERFPGISRYIADTLNDAKARGYTQTLFGRKTHFPRLKSATQHERAGSERAAINAPIQGTS
ADIIKRAMARMGPALRDAGLENVRMLMQVHDELVFELPAGDVEAATPVIRGVMESAAEPA
VTLSVPLGVEIGTGPSWGAAH
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgccccatctctatctggtcgacggctccggctatatcttccgcgcctatcaccggctg
cccccgctgaccaacaaacatggcgagcccgtgggggccgtctatggctacaccaccatg
ctgtggaagctcgccgacgagctgcacaaggccgatggccccacgcacatggcggtgatc
ctcgacaagagcgagcacaccttccgcaacgagatgtacgatcagtacaaggcgcaccgt
cccccggcgcccgaggacctcgtcccccagttcccgatgatccgcgacgcgacacgcgcc
ttcagtttgccgtgcatcgaggaagccggatgggaagccgacgatctgatcgcgtcctac
accaaagccgcgctggcgcagggctggcaggtcaccatcgtcagctccgacaaggatctg
atgcagctgatgaccgacccgtcggtcgatatgctcgacacgatgaacaaccgccgcctg
gggccgaaggataccgaagagaaattcggtgtcctccccgaaaagctcggtgaggttctg
gcgctgatgggcgacagcgtcgacaacgtgcccggcgtcaagggcatcggccccaagacc
gctgccaagctgatccaggagttcggcacggtcgatgcagtgctggaggcggcaccatcg
atgaagccgtccaagatgcgcgacaatctgatcgaatatgccgatatggcgcgcctcagc
cgcaagctggtcgagcttgccagcgacgtgcctctccccgacccgctggacgagctcgag
ctcaagggcattcccgacgcgccgctgcgcgcctttctcgagcatcatgggttcaaaacc
ttgctctcgcgcctaggtggcggcgcaagcgttgccgatgcgccagtcgccagtccggag
ccggtgccaatgcccgacgacccgccctgcgaccacgacggatatgagacggtggtggac
gaagcggcgctcgaacgctggattctcgccgcgaagcatcagggctgggttgcgatcgac
actgagacaaccggggtcgatgccacccgcgccgagctggtcggagtcagcatggcgctc
gaacccaaccgcgcctgctacatcccggtcggccatggcggcacagatatgttcgccgaa
aagccggttcagctcgaccgcaacctggtgatcgccaagctgaaaccgctgctcgaggac
ccgtcggtcctcaagatcggtcacaacatcaaatacgatctgatcgtgctgtcgcgtgcc
ggcatcgacgttgctccttatgacgacacgatcgtgatgagcttcgacctcgatgccgga
ctccacggccacgggatggatgagctggcagcgacgcacctctcccacacctgtatcgcc
tacaaggacgtggtcgggtccggaaagaagcagctcggcttccaggaagtcgatctcaag
gccgcaacccgttacgccgccgaggatgccgacgtcacgctgcggctgtggcggcgcctc
aagccacgcctgccgttcgagggatcgacccgggtctatgagatggtggaccgcccgctc
gcgcgcgtcatcgccgacatggaactggccggggtcaaggtcgatgctggggtgctggcg
aagctttccgacgacttttcccgccagattgccgcactggaagaagaaatccacggcatc
gccgggttcaaattcaccatcggcagccccaagcagctcggcgatgtcctcttcgacaag
atggggatcaagggcgggcgcaagggcaagtcgggcgtctattcgaccgacgtcaacgag
ctggagcggatcgccgcggacaaggattcgccagggcgggagatggtgctgaaggtgctc
gactggcgccagctgaccaagctcaaatcgacttataccgacgcgcttcaggcgcagatc
aacccggcgaccggccgcgtccacaccagctattcgttgaccggcgcgcagaccggccgc
ctgtcatcgaccgaccccaacctccagaacatcccggtgcggaccgaggtcgggcgccag
atccgcgacgccttcgtcgccgagccgggcaacgtcatcctcagcgccgactattcgcag
atcgagttgcggctggcggcacacatcgccgacgtgccccagctgcgcgaggcgttcgaa
cgcggcgacgacatccacaacatgaccgcgaccgagctgttcggcgaggtcaaccgcgac
acccgcggccgcgccaagacgatcaacttcgcgatcctctacggcatcagccgttggggt
ctcgccggccggctcgacgtcaccccggacgaggcgcaggcgatgatcgaccgctatttc
gagcggttccccggcatcagccgctacatcgccgacacgctgaacgatgcgaaggcgcgc
ggctatacgcagacgctgttcggccggaagacgcacttcccgcgcctcaaatcggccacc
cagcacgagcgtgcaggcagcgaacgcgctgcgatcaacgcgccgatccagggcaccagc
gcggacatcatcaagcgcgcgatggcgcggatgggcccggcgctgcgggatgccggactg
gagaacgtcaggatgctgatgcaggtccatgacgaactggtcttcgaactgcccgcaggc
gatgtcgaagcggcaacaccggtcatccgcggggtgatggagagcgcggcggaacccgcc
gtcacgctcagtgtgccgctgggggtcgagatcggcacaggcccaagctggggcgcggcg
cattga

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