Sphingomonas koreensis: BRX40_17275 Help Entry BRX40_17275       CDS       T04828                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism skr  Sphingomonas koreensis Pathway skr03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:skr00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     BRX40_17275  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:skr03400]     BRX40_17275 Enzymes [BR:skr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      BRX40_17275 DNA repair and recombination proteins [BR:skr03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      BRX40_17275 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  APR53927 UniProt:  A0A1L6JDL6 LinkDB All DBs Position 3576833..3579349 Genome browser AA seq 838 aa AA seqDB search MTAANPLDIYNAKRDFTRTKEPRGKVAKKRGNSFVVQKHAATRLHWDFRLEIDGVLKSWA VTKGPSCDPADKRLAVRTEDHPLDYGEFEGNIPKGEYGGGTVMLWDRGTWEPVAGKRADD LEDGHLHFVLHGERMKGEWLLVRMKGRPGEKRENWLLRKIDDAEAGQGDTLVERGLTSVL TGRSLAQIEADTAGTQSLKGIKGKAFARKMQAAKVHNARIGGKAQEKRKSRAAPLPRFVK PQLATLVDDVPTGNEWLHEIKYDGYRLLIAARGGEVKVYTRNGLDWTAKFGPLVQTIAAL DLPPALIDGEVVAFDANGNPSFSVLQSVLKRGHGEQRADTPFHFFAFDLLSLDGADLKPL PLIERKERLEALLAHAESPIRVADHLIGAGERLYRSLCDAGQEGIIAKRIDDAYRSGRTR NWVKVKCTRRQEFVVIGWTASKAKGRAFASLLLAQHEGKTLTYKGKVGTGFDSGTMDELA AAMKPLATRDAPAEVPRVEARGAHWIEPKLVAEVAFAEFTGDGRVRHGSFLGLRTDKPAK SVKPEKPAPAPPPESGVKISSRERVIFPDSGQTKGDLADYYARIAPLMLPFAANRPVSLV RCPQGRSRNCFFQKHDSGAFGDHVHHVPIREKDGGTEDYIYVDDADGLLACVQMGTIEFH GWASRADAVELPDRMIFDLDPDEGMDFARVRTAAADIRDQLSAIGLVSFAMLSGGKGVHV VVPLTPGHDWETHKDFASRLAHALSAAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAIL PYSARARAGAPVAIPIDWTELSGMKDAHPFDIGDAETLWERSNMLKGWGFAAQRLPQL NT seq 2517 nt NT seq  +upstreamnt  +downstreamnt atgacggccgcgaaccccctggatatctacaacgctaaacgtgacttcacccgcacgaag gaacccaggggcaaggtcgcgaagaagcgcggcaacagcttcgtcgtccagaagcacgcc gcgacgcggcttcactgggatttccggctcgagatcgacggcgtcctcaagagctgggcg gtcacaaagggcccgagctgcgaccccgccgacaagcgcctggcggtccgcaccgaggat cacccgctcgactatggggagttcgaggggaatatcccgaaaggcgaatatggcggcggc accgtcatgctgtgggatcgcggcacctgggagccggtcgctggcaagcgcgccgacgac ctcgaggacggccatctccacttcgtcctccatggcgagcggatgaaaggcgaatggctg ctggtgcgcatgaagggtcgcccgggcgagaagcgcgagaactggctgctacgcaagatc gacgatgcggaggcgggccagggcgacacgctggtcgaacgcggcctgaccagcgtgctc accggccggtcgctggcgcagatcgaggcggacaccgccggcacccagtcgctcaagggc atcaagggcaaggcattcgcccggaagatgcaggcggcgaaagtgcacaatgcccgcatc gggggcaaggcacaggaaaagaggaagtcgcgcgcggccccgcttccccgcttcgtcaag ccgcagctggcgacgctggtcgatgatgtgcccaccggcaatgagtggctgcacgaaatc aaatatgacggctatcgcctgctgatcgcggcgcgcggcggcgaagtgaaggtctacacc cgcaacggcctagactggaccgccaagttcggccctctggtacagaccatcgccgcgctc gaccttccgcccgcgctgatcgacggcgaggtggtcgctttcgatgcgaacggcaatcct agcttctccgtgctgcaatcggtgctcaagcgcggccacggcgaacagcgcgctgacacg ccctttcacttcttcgccttcgacctgctctcgctcgacggagccgacctcaagccgctg cccctgatcgagcgcaaggagcggctggaagcgctgctcgcccatgccgagtcaccgatc cgagttgccgatcacctgatcggcgcgggggaaaggctctaccggtcgctatgcgatgcg gggcaggaagggatcatcgccaagcgcatcgacgacgcctatcgcagcggtcgcactcgc aactgggtcaaggtcaaatgcacccgccggcaggaattcgtggtgatcggctggaccgcg agcaaggcgaagggccgcgccttcgcctcgctcctcctcgcccagcacgaggggaagacg ctgacctacaagggcaaggtcggcaccggcttcgactcgggcacgatggacgaactcgcc gccgcgatgaaaccgctcgccacccgggacgcccccgccgaagttccccgcgtcgaggcg cgcggcgcgcactggatcgagccgaagctggtcgcggaggtcgccttcgccgaattcacc ggtgacggtcgcgtccgccatggcagcttcctcggcctgcgcaccgacaagccggcaaag tctgtgaaaccggaaaagccggcccccgcgccgccgcccgagagcggggtgaagatcagc agccgcgaacgcgtcatcttccccgacagcggtcagaccaagggcgatctggccgactat tatgcgcgcatcgccccgctgatgctccccttcgccgccaaccgcccggtcagcctggtc cgctgcccgcaggggcgctccaggaactgcttcttccagaagcacgacagcggcgcattc ggcgatcatgtccatcacgtgccgatccgcgagaaggacggcgggacagaggactatatc tatgtcgacgatgccgacggcctcctcgcctgcgtccagatgggaacgatcgaattccat ggctgggcgtctcgcgccgacgcggtcgaactgcccgaccggatgatcttcgacctcgat ccggacgagggcatggacttcgcccgcgtgcggacggctgccgccgacatccgcgaccag ctgagcgcaatcggtctcgtctcctttgccatgttgtcggggggcaagggcgtgcatgtc gtcgtgccgctgacgcctggtcatgactgggaaacgcacaaggatttcgcttcccgctta gcccatgcgcttagcgcggccgaaccggatcgcttcgtcgcgacgatgagcaaggcgaag cgcaagggccgtatcttcatcgactggcttcgcaaccagcgcggcagcaccgcgatcctg ccctattccgcgcgggcgcgggcaggcgcgcctgtcgcgataccgatcgactggaccgag ctttcggggatgaaggacgcgcacccgttcgatatcggggacgccgaaacgctgtgggaa cggtcgaatatgctgaaaggctggggcttcgcggcgcagcgattgccgcaactatga

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