Serpula lacrymans: SERLADRAFT_452596
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Entry
SERLADRAFT_452596 CDS
T03135
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sla
Serpula lacrymans
Pathway
sla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SERLADRAFT_452596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sla03400
]
SERLADRAFT_452596
Enzymes [BR:
sla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SERLADRAFT_452596
DNA repair and recombination proteins [BR:
sla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SERLADRAFT_452596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
DNA_ligase_A_C
BRCT_3
Solute_trans_a
DUF4073
Motif
Other DBs
NCBI-GeneID:
18816845
NCBI-ProteinID:
XP_007322465
JGI:
452596
UniProt:
F8P7U1
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MMQPTPAPSSLPGSPKGDVNSVEESVTYPAPPQNNGSAPFSVLAGLFERLSTERKPERRR
KLLDAWFNHWREEIGHDLYPVLRLILPQKDRERAVYGLKEKNLAKTYIKLIPLGMRDPDA
IRLLNWKKPTEKDKSSGDFPNVLYEVVNKRSSVIEGSLSITDLNEILDELSKNLGKQDIQ
SKILQRVYNRATPEEQRWIVRIILKDMVISVKETTVFGVLHPDAQDLFNTCSDLKKVAWE
LWDPSRRLKAEDKTIQLFRAFAPMLCKRPTRKIEESVKEMQGRKFIIEEKLDGERIQLHK
RGNEYFYCSRKGKDYTYLYGNHVGTGSLTPFIASAFDDRIEDIILDGEMLVWDPVSERNL
PFGTLKTAALDKTKREHNPRPCFKVFDLLHLNGMSLLQKSLKFRKRNLRACIKEIPGRIE
LAVEFEGKTAKDVREKMDEVMAARGEGLVIKHPDSEYVLNGRNKDWIKVKPEYMDNMGET
VDVLVVGGNYGSGKRSGGVSTLICAVLDDRHSSNDDEELKYSSFVRIGSGLTFADYIWVR
QKPWKLWDPNSPPTFLQTAKRSQDDKGDVYLEPEDSFMLKVKAAEITISDQYHLGFTMRF
PRALSIRDDLSIADCMTATAILENLRTERKRKMESDSSMSKKKKSKTKVAKPSMLPEYQG
LKLNSIEIESNIFEDIKFVVSSDPKSRTGDHDKKELMKMIHANGGSCAQVVTNQQPSMVI
YGGSTTPYDIRLLINKDTVDIIRPQWIVDCVARGEILPLKKKYFFHATFDRQQSADYNQP
DTDEDEDEIMADEEDASLRVPVTPDLKGPKVEEADDIDPSLADWFKVGAKAPEDSATESE
TDADSVNDDVNPDEDEDDWFKVKPEGSLIADKSVITDVPDSSAQPKDEDVSMGADSGMEY
DPNLIFRYLCFYLDSPDNARKHGMTVRAKHEKDVAQSFVDISKMIQENGGQVVDLDDPKL
THIVMDKRDDSRRVELIQRTFKPKRRRLVIAGYIQACLEEETLLDEEEFTP
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagccaacgccagcaccatcgtctcttccaggatctccaaagggcgatgtcaat
tcggtggaggaatcagtcacgtatcccgctccacctcaaaacaacgggagcgctcctttc
tctgttcttgctggtttgttcgagagattatctactgaaagaaaaccggagcgaagaaga
aagttgttggatgcctggttcaaccactggagagaagaaataggccatgacttatatcct
gttctacgcctcattttgcctcagaaggaccgagagcgtgctgtatatggcctcaaagag
aaaaatctggctaaaacatacattaaactaatccctcttggtatgagagatccagatgct
atacgcctgctcaactggaagaagccaactgagaaagataaaagttctggcgacttcccc
aatgtcctttatgaagttgtgaacaaacggtcttcagtcatcgaaggctctctttcaatc
actgacctcaatgaaatactcgatgagctgtctaaaaatctaggcaaacaggacatccag
tcaaagatattgcaacgagtatacaacagagcaactcccgaagaacaacgttggatagta
agaatcatcctaaaagacatggtgatatccgtcaaagaaacaactgtttttggggttttg
catccagatgctcaggacctattcaacacttgttcagaccttaagaaggttgcctgggaa
ctatgggatccctctcgcagacttaaagccgaggataaaactatacaattattccgtgcc
ttcgcaccgatgttatgtaaaaggccaacgcgcaagattgaagagtctgtgaaagagatg
caaggtcgtaagttcattattgaagaaaaacttgatggagagcgcatacaattacacaag
cgcggaaatgaatatttctactgttcaagaaaaggaaaggattatacctacctgtatggc
aatcacgtcgggacgggtagcctgacgccttttattgcttcggctttcgacgaccggata
gaagatataattctcgacggcgaaatgctggtatgggatcccgtttcagagcgcaatctt
cctttcggtactctcaaaacagcagccctcgacaaaactaagagggaacataatccccgg
ccatgcttcaaagtattcgatctccttcatttaaatggcatgtcacttctccagaaatct
ctcaagttccgcaaacgcaatcttcgtgcatgtattaaagaaatccctggtcgcattgag
ttagccgtagaatttgagggtaagactgcgaaggatgtcagagagaaaatggatgaagta
atggcagcaaggggggaaggtttggtcatcaagcatccagattctgaatatgtcctaaac
ggtagaaataaagattggatcaaggttaaaccggagtatatggacaatatgggcgagact
gttgatgtgttggttgtcggtggtaactacggaagtggaaaacgttctggtggtgtttct
actctcatatgtgctgttctcgacgaccggcattcttccaacgacgacgaagagctcaaa
tatagtagttttgttcgcatagggtctggcttgacctttgcagattatatctgggtgcgc
cagaaaccctggaagctttgggatcccaattctccccctaccttcctgcagactgcgaaa
cggtcacaggatgacaagggtgacgtatatcttgaaccagaggattcatttatgctgaag
gttaaggccgctgaaatcacaatatcagatcagtaccatctgggtttcacaatgcgcttc
cctcgtgcgctttctatccgcgacgatctttctatcgcagattgcatgacagcaactgct
atcctggaaaatttacgaactgagagaaagagaaaaatggagagcgactccagtatgagc
aagaagaagaaaagcaaaacgaaagttgcaaagccttccatgctcccagaatatcaaggg
ctcaagctcaattcaattgaaatcgagtcaaatatatttgaagatatcaagtttgtggta
tcttcggatccgaaatcgaggacaggagaccatgacaaaaaggagctgatgaagatgatt
catgccaatggtggtagctgcgctcaagtagttactaatcaacagccaagcatggtgatt
tacggtggttcgacaacaccatacgatattagacttttgatcaacaaagacactgttgac
attatccggccacaatggatcgtagactgcgttgctcgcggggagattctcccgctcaag
aagaagtattttttccacgcaacgttcgatcgccaacaatctgcggattacaaccagccc
gatactgatgaagacgaggatgaaattatggccgatgaagaggatgctagtttacgtgtt
cccgtgacccctgatctgaaggggcccaaggtagaggaagctgacgacatagatccctca
ttggcagactggtttaaagtcggagcaaaagcgcctgaagatagcgccaccgaatcagaa
acggatgccgactccgtgaatgacgatgtgaatcctgatgaggatgaggacgactggttt
aaagttaaacctgaaggaagtctcattgcagacaagagcgttataacagatgtgccggac
tcaagcgctcaacccaaggatgaagatgtttcaatgggggcagattccggtatggaatac
gaccccaatttaatctttagatacctatgcttctacctcgattcaccggacaacgctcgc
aaacacggaatgacggtgcgagcgaagcatgaaaaggatgtcgctcagagtttcgtcgac
atctcgaagatgattcaagaaaatggcggacaagtggtggaccttgacgaccccaagctc
acacatatagtaatggataagcgggatgattcccgtcgtgtagagcttattcagcgcacg
ttcaagccaaaacgacgtcggttggttatagctgggtacatccaagcctgcctagaggaa
gaaactttgttggacgaagaagagttcactccataa
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