Seriola lalandi dorsalis (Yellowtail amberjack): 111662260
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Entry
111662260 CDS
T06058
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111662260 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111662260 (exosc5)
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111662260 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111662260
NCBI-ProteinID:
XP_023271826
Ensembl:
ENSSLDG00000005218
LinkDB
All DBs
Position
Unknown
AA seq
258 aa
AA seq
DB search
MQLSTIPPRSYVITKSPSAAKQMTSSTLDRLLFLHGGGVMEVCGSSSVTLREFGCEQSLL
SRPDGSASFIQGDTSVLAGVYGPAEVKVSKEIYDRATLEVLIQPKVGLPSVRERSQEQCV
RETCEASLLLSLHPRSSLTLILQVLHDDGSLLSCFLNAACMALMDAGLPMSCLFCGVTCA
IDTDGQIITDPTAAQEKESRALMTFAIDSTERRVLMSSTKGSFSVHELQQCIAVSQKASE
KIFQFYRDSVRRRYSKTL
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcagttatcaacgatacctcctcgctcttatgtcatcactaagagtccttcagcggca
aaacagatgacatcatccaccctcgacagactacttttcctccatggtggcggcgtgatg
gaggtgtgcggctcttcaagtgttaccctgagagagtttggctgtgagcagagcttactg
tctcgacctgacggctcggcgtccttcatccaaggagacacaagtgtgttggctggagtg
tatggaccagcggaggttaaggtcagcaaggagatctatgaccgggcgaccctggaggtg
ttgatacagcccaaagtgggactgccaagtgtcagggagcgatcacaggagcagtgtgtg
cgagagacctgcgaggcatctctgctcttgtcacttcatccccgctcgtccctcactctc
attcttcaggtgttgcacgacgatggttcactcttgtcctgcttcttgaatgccgcctgt
atggctctcatggatgcaggcctgcctatgagttgcctgttctgcggagtgacctgtgcc
atcgacacagacggtcagatcatcacagaccccactgcagctcaggagaaggaaagtcga
gctttgatgacctttgctattgacagcacggagcgccgagtattgatgtcgtcaaccaaa
ggatcattttcagtccatgagctgcagcagtgtatagcagtcagtcagaaagcatcagag
aagatcttccagttctacagggactctgtcaggcggcgatactccaaaaccctctga
DBGET
integrated database retrieval system
