Seriola lalandi dorsalis (Yellowtail amberjack): 111663061
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Entry
111663061 CDS
T06058
Name
(RefSeq) collagen alpha-1(XXVII) chain B-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111663061
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111663061
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111663061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
111663061
NCBI-ProteinID:
XP_023272880
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MEPDNAPYSKLKTTGVGGRVLILWTILSCTCSLRLAQAQDVDVLQQLGLSGRRAGGSSSS
GARTIPNGIIPFKSGIILTPRARIQVPVRTVIPANYSSTNLSLILSLSVHRVNSAFLFSV
LSKKRKVQLAVQFVPGKVLVHVGQRSFVSFDYDVHDGRWHSLALDVQGHQVFLHTSCGKK
SVHTDLRSKKVEALDPEGSFLLGKMNHNSVPFEGAICQFDIYPSAKAAHNYCDYIKKHCR
EADTYRPVFPPLLPLFSTDPNITVTHLTPLSLTELSKKGLRPALALIEENTRTTILVPTD
RLLMQNKTSVHQTLSTPQPGAVSLSPPVHPGLESPLKFPTQTVATSLRISVTPPSPTLHT
GKTTKQGNTNALKPFGNTMDLPASTRPSEMRPNLQTTAASTQGSPSNAYLPHKKQLSTVA
PKKPEPKVTGVQDVKPTSLIPVTPAATDGFQTFDLEPTYFSLLAGPPGLKGEPGPPGLQG
LPGLPGKPGKRGPRGPPGPHGNPGRPGPPGVKGQKGDPGLSPGQAPKGQKGEPGVVGPPG
LPGQDGRKGQKGHPGPSGLPGEPGERGDDGSPGAKGYPGRQGFPGPIGKMGPKGVRGHIG
IPGLFGLPGPDGERGIPGVHGKKGKMGRPGFPGDFGERGPPGPDGNPGELGAPGPCGVPG
LIGDMGPVGIMGFAGPPGLKGVPGNLGEPGLKGDKGDVGLPGEPGECGFQGDKGMRGSPG
LPGPRGKPGPQGKPGEKGPDGLPGPLGPEGFPGDIGPPGQNGPEGPKGKQGTRGLPGPRG
TPGLQGDEGPVGPAGPAGLEGRPGRQGFPGLTGPDGPKGETGITGEVGKLGERGLPGFIG
PFGEMGIAGEKGDRGKTGAPGPPGEPGPMGHTGIPGETGLPGMQGIPGPLGSRGSIGIRG
PKGIRGPRGPDGPVGEKGSTGMKGPDGPPGKPGFPGETGKLGEAAEAGPKGFPGVQGPSG
PPGAKGIAGEPGPAGPLGTIGPLGEMGLSGLPGKAGERGLPGETGEKGAIGLPGSIGEQG
LIGERGEPGIDGEAGPSGPDGAKGEKGDAGPEGAKGDRGEIGLKGNEGPPGPPGLLGVRG
QEGKPGKIGERGKRGEKGSKGHQGHLGETGPIGERGEMGFVGQKGTRGTIGPVGAPGRMG
QQGNPGISGYEGHMGPQGPLGPPGPKGEKGEQGDDSKAEGPPGPQGDRGPPGDRGERGEP
GDPGHIGQMGFDGKRGEAGASGLPGHLGPKGRPGLKGSKGDQGQKGKSGATGTSGTKGPP
GPEGPPGPRGVVGREGLEGPHGMDGLLGKDGSKGVKGEQGEDGEVGFPGKPGQQGKTGVT
GLPGSQGYFGQKGERGLPGQTGPSGKRGSIGGMGLPGKQGDQGTKGQPGDTGGQGFPGVS
GLFGPKGPPGDTGPAGIQGPRGPRGLMGTEGALGPVGIIGPSGHPGPQGDKGSRGETGLQ
GPRGSPGPRGPPGLPGRHSSALSLRNEALGAAFQVIIDSHAALRQEQNYQSMDLPMLDQG
TEIFKTLQHLSTLIQSLKNPLGTRDNPARICRDLYNCEHRMYDGTYWIDPNLGCATDTIE
VTCNFTAGGQTCLKPITVSKLETGVGRIQMNFIHLLSTEAVQHITIHCLNTPVWAAGPSL
QPSPSAVSFKAWNGEMIRAGDLLEPIIHRDDCWIKDGRWHQTHFIFQSQDPNLLPIVDVY
NLPTTAPGARFHLEVGPVCFL
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaaaccactggagtcggggggagagtt
ctgattctttggactatactctcttgcacctgttctctaaggctcgcacaagcacaagat
gtggatgttctgcagcagctcgggctttctgggcgaagagcaggcgggtcatcatcttca
ggcgctcgaaccatccctaatggcatcatccccttcaagtctggaattatcctcaccccg
agggcacgtatccaggtgcctgtgcgaactgtcatccccgctaactacagctccaccaat
ctctccctgatcctcagtttgtctgttcatcgagtcaacagcgcttttcttttctcagtt
ctgtctaagaaaaggaaagtgcagctcgcagtgcagtttgttccggggaaggtcctggta
catgtggggcagaggagctttgtgagtttcgactatgatgtccacgatggccggtggcat
agtctggccttggatgtccaaggccatcaggtgttcttacacacttcttgtgggaagaaa
agcgtacatacagatttgcgttctaaaaaagttgaggccctggatccagagggctctttc
ctgctgggcaaaatgaaccacaactcggtgccgtttgaaggtgccatctgtcagtttgac
atttatccctctgctaaggcagctcataactattgtgattacattaagaaacattgcaga
gaagccgacacgtatcggcctgtgtttccacccctgctacctctattttccacagaccca
aatattactgtcactcatctaactccactgtcattgacagagctttccaaaaaggggctg
agacctgctctggccttgattgaggaaaacaccaggactactattcttgttccaactgac
cgcttgctgatgcagaacaaaacatctgtgcatcagactttgagcactccacaacctggt
gctgtgtctctttctccaccagttcatccagggttggaaagcccgttaaaatttccaact
caaacagttgctacatctcttaggatcagcgtgacaccaccaagcccaactttacatact
ggaaagaccacaaagcaaggaaatactaatgccctgaaaccttttgggaatactatggat
ttacctgcttccaccagaccatcagagatgaggccaaacctccagaccacagctgcttct
acacaggggtctccttcaaacgcctaccttccccataaaaagcagttgagcacagtagct
cctaagaaacctgagccaaaagtgaccggtgtgcaggatgtcaaacccacctcgcttatt
ccagtcactccagctgcaacagatggcttccaaacatttgacctggaaccgacttacttc
tcactgctggctggaccacctggactaaagggagaaccaggaccgccgggccttcaagga
cttccagggttgcctggaaagccagggaagaggggcccaaggggtccccctggcccacat
ggaaaccctggtcgtcctggacctcctggagtgaagggacaaaaaggagatcccggactg
tcccctggtcaagctccaaaaggacaaaaaggagagcccggtgtcgtgggcccccctgga
ctgcctggccaagatggacgaaagggacaaaaagggcatcctggtccctctggtctccca
ggtgaacctggtgaacggggagatgatggaagccctggggccaaaggctatcctggcagg
cagggttttcctgggcctatagggaaaatggggccaaagggagtcaggggacacattggc
atccctgggctttttggcctccctggtcctgatggcgaaagaggaattcctggcgttcat
gggaagaagggcaagatgggtaggccgggttttcctggtgactttggagagaggggacct
ccagggcctgatgggaacccaggtgaactgggagctcctggcccatgtggagtccctggt
cttattggagacatgggccctgttggcattatgggcttcgcaggaccaccgggactcaag
ggagtaccaggcaacctaggggaaccaggactgaaaggtgataagggggacgttggcttg
ccaggagagccgggggagtgtggattccaaggggacaagggtatgcgtggctcacctggg
ttgccgggtcctcgtggaaaacctggaccacagggcaaacctggtgaaaagggtcctgat
ggtttacctggccctcttggcccagagggctttccaggtgacattggcccaccaggtcaa
aacggccctgaaggacccaagggaaagcaagggacaagaggtttgcccggtccaagagga
acacctggacttcagggtgatgagggaccagttgggccagctggacccgctggactcgag
ggcaggcctgggaggcagggattccctggattgacaggcccagacggaccgaagggcgag
accgggataactggcgaggtcggaaagcttggcgagaggggactgcctggttttattggg
ccctttggagagatgggcatcgccggagaaaagggggaccgagggaaaacgggtgcccct
gggccgccaggtgaaccggggccgatgggtcacactggaatacctggagaaacggggcta
cctggaatgcaagggatcccagggcctctcggttcacggggatccatcggcatcagagga
ccgaaaggcatcaggggtccaagaggtcccgatggcccagtgggggagaaagggtctaca
ggaatgaagggccctgacggcccaccaggaaaaccgggcttccctggagagacgggaaag
cttggcgaggcagctgaagccgggcctaagggatttccaggtgttcagggaccctcggga
cctccaggagccaaaggaattgcaggagagcctggaccagcagggcccctgggaacgatt
ggaccactgggggagatgggactgtcgggtctgccagggaaggctggagagagaggactg
cctggtgaaactggagagaagggtgccatcggtctacctggcagcatcggggagcagggt
ctgattggcgagagaggtgagccaggcatcgatggggaggctggaccaagtggacctgat
ggagctaagggtgaaaagggggatgctggtccagagggcgctaaaggagacaggggtgaa
atcggcctgaaaggaaacgaaggacctcccgggcctcctggactgctgggtgtacggggt
caggaggggaagcctggcaaaattggtgaaagaggaaaacgaggagaaaaggggagcaaa
ggacaccaaggtcacctgggagagaccgggccaatcggtgagcggggagaaatgggattt
gtgggacagaagggcacgagaggaaccatcgggccagtgggtgctccagggagaatgggc
caacaaggaaatccaggcatatcaggttacgagggtcacatgggaccacagggcccactg
ggacctcctgggccaaaaggtgaaaagggtgaacagggagatgacagcaaggctgaaggt
cctcctggtccccaaggtgacagaggtcctcctggagacagaggagagagaggagagcca
ggtgaccccggacacattggtcaaatgggttttgatggaaagagaggtgaagctggtgcc
tcagggcttcctggacatcttgggccaaagggacgaccagggctgaaaggatccaaaggt
gatcaaggtcagaaaggaaaatcgggggcaacaggaacatctgggaccaaaggaccacca
ggtccagagggtcctcctggcccacggggggttgtgggcagggagggacttgaggggccg
catggaatggatggacttcttggtaaagatgggagtaaaggagtcaagggggagcaagga
gaagacggagaggtggggttccccggaaaacctgggcagcagggtaaaacgggtgtgaca
gggcttcctggaagtcaaggctactttggacagaagggtgagaggggtcttccaggccaa
accggtccatcaggaaaaagaggctctattggtgggatgggattgccaggaaaacaagga
gaccagggaactaaagggcaaccaggggatactggtggacaaggatttccaggggtgtcg
ggtctgtttgggccaaagggaccacctggagatactggcccagcagggatacaggggccg
agaggaccacgtggtttgatgggtacggagggagctttgggccccgttggcatcattggc
cccagcggtcatcctggaccccagggtgacaaaggaagtcggggggagacgggtttgcaa
ggaccaaggggatctcctggtcctcgtggaccaccaggactaccaggtcgtcacagttct
gccctttcacttagaaatgaggctcttggcgctgcctttcaagtcatcattgattcccat
gctgcactgaggcaagagcagaattatcagagcatggacctgcccatgttagaccagggc
acagagattttcaagaccctgcagcatctcagcactctgatccagagtttaaagaaccct
ctgggaacccgtgacaatcctgccagaatctgccgagacctttacaactgtgaacacagg
atgtacgatggcacttactggatcgacccgaacctcggctgcgccaccgacactattgag
gtgacatgtaacttcactgctggaggacaaacgtgcctgaaacctattacggtgtccaag
ttggagacaggagtgggtcgtatccagatgaacttcatccaccttttgagcactgaggcc
gtgcagcacatcaccattcactgtctcaacacacctgtgtgggcagcaggaccctcccta
cagccttcacccagcgctgtgagcttcaaggcctggaacggcgagatgatccgagcagga
gacctcctggagccgatcatacacagggatgactgctggatcaaagatggccgatggcat
cagacccacttcatcttccagtcccaggacccgaacttactccccatagtggatgtgtac
aacctaccaacaacagcacctggcgcacgctttcacctcgaggtgggacccgtgtgcttc
ttatag
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integrated database retrieval system
