Sugiyamaella lignohabitans: AWJ20_311
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Entry
AWJ20_311 CDS
T05270
Symbol
DHH1
Name
(RefSeq) DExD/H-box ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_311 (DHH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_311 (DHH1)
03036 Chromosome and associated proteins [BR:
slb03036
]
AWJ20_311 (DHH1)
Enzymes [BR:
slb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWJ20_311 (DHH1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AWJ20_311 (DHH1)
mRNA degradation factors
5'-3' decay
Decapping complex
AWJ20_311 (DHH1)
Chromosome and associated proteins [BR:
slb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
AWJ20_311 (DHH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
30035096
NCBI-ProteinID:
XP_018734553
UniProt:
A0A167CT65
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All DBs
Position
A:complement(969152..970762)
Genome browser
AA seq
536 aa
AA seq
DB search
MSDAWKSQLNIPEKDHRPQTEDVTATKGNGFEDFYLKRELLMGIFEAGFEKPSPIQEEAI
PIALAGRDILARAKNGTGKTAAFTIPALQQVNPKLGKIQALILVPTRELALQTSQVCRTL
GKHLGINVMVTTGGTTLKDDIIRLNESVHVLVGTPGRVLDLAGKNVVDFSECPMFIMDEA
DKLLSPDFTPIIEQLLAHFPPDRQILLFSATFPLLVKSFMDKHLNKPYEINLMDELTLRG
ITQYYAFVEEKQKLHCLNTLFSKLSINQSIIFCNSTNRVELLARKITELGYSCYYSHAKM
IQAHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLINWNDRFNLYQIEQELGTEIKPIPSHIDRSLYVAQNTDAIPKPFPLKELPK
SNQRSHEKYQQQTDLNFQPRPQHHNQHHHHQQQQGQQHLQQNQNQNPNQIPTQNQHPSQA
FSGQPQPPQGVPPQGYPQFPQGYPPQPGYPPQGFPQQPPVPPNGQFYAQPPPALPQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgcttggaaatctcaattaaatattcctgaaaaggaccaccgtcctcagact
gaagacgtgaccgctacaaaaggtaacggctttgaagacttctatctcaagagagagctt
ctaatgggcatttttgaagccggctttgaaaaaccctcacctattcaagaagaagccatt
cccattgccctggcaggcagagacattcttgctagagccaagaatggtactggtaagact
gctgctttcaccattccagcgttacaacaagtcaaccctaaactaggcaagatccaggct
ttgattctagtgccaacaagagaattagcattgcaaacatcccaagtatgtcgtactttg
ggcaagcacttaggtattaatgtcatggtcactaccggtggtaccactctaaaggacgat
attattcgtttgaatgagagtgttcatgtattagtgggtactcctggtagagttcttgat
ttggctggtaagaacgttgtggatttctcggaatgtcctatgtttatcatggacgaagcc
gataagctgctatcaccggatttcactcctattatcgaacaattgttggcccatttccct
cctgacagacagatcctattattttcagccactttcccattgctcgtcaagagttttatg
gataaacatcttaacaagccatatgaaattaatttaatggacgagctcactttgagaggt
attacccaatattacgcgtttgttgaggagaagcagaaactacactgtttgaacacgcta
ttttccaaactgtctattaaccaatcgattattttctgtaactcgacgaaccgtgttgaa
ttattggctagaaaaatcactgagctcggctattcatgctactacagtcacgcaaagatg
atccaagcccaccgtaaccgagttttccacgagttccgtaacggaacctgtcgtaacctg
gtgtgctcagatttgcttactcgtggtatcgatattcaagctgtcaacgtggttatcaac
tttgacttccccaaaaacgccgaaacatatctgcatagaatcggtagatctggtagattc
ggtcacttgggtctggccatcaaccttatcaactggaacgaccgtttcaacttgtaccaa
atagaacaggagttgggtactgaaatcaagcccattccttcgcatatcgacaggtctttg
tatgttgcccaaaacactgacgctattcccaagcctttccctctgaaagagttgcccaaa
tccaaccaacgtagccacgaaaagtaccaacaacaaactgacttgaacttccaaccaaga
ccccagcatcacaaccaacaccatcaccaccagcaacaacagggtcaacaacatctacaa
caaaatcagaatcaaaacccaaaccagattcccacccaaaaccagcaccctagccaggcc
ttctctggtcaaccgcaacctcctcaaggagttcctccacaaggatatcctcaatttcct
caaggataccccccacaacctggctatccacctcagggattccctcaacagccacctgtg
ccacccaacggccagttttatgcccaaccccctccagctctcccccagtaa
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