KEGG   Sugiyamaella lignohabitans: AWJ20_66
Entry
AWJ20_66          CDS       T05270                                 
Symbol
CAF40
Name
(RefSeq) CCR4-NOT core subunit CAF40
  KO
K12606  CCR4-NOT transcription complex subunit 9
Organism
slb  Sugiyamaella lignohabitans
Pathway
slb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWJ20_66 (CAF40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slb03019]
    AWJ20_66 (CAF40)
Messenger RNA biogenesis [BR:slb03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     AWJ20_66 (CAF40)
SSDB
Motif
Pfam: Rcd1 Ndc1_Nup
Other DBs
NCBI-GeneID: 30037716
NCBI-ProteinID: XP_018734319
UniProt: A0A167CL68
LinkDB
Position
A:complement(217960..219288)
AA seq 442 aa
MYANVARQQGGAEQGPPGPNYAQLPQHQHPQQQPQQPQQQQQQQQQQQQQLHPQQAQAQA
QAQGQAPGPGQPQNHPQSQSQHQQQQQQQQQPQQNPGQPHLMSQGPSQGNLGGGNIGANI
GGNGTGLPAGISASALNIINAANSSAGQAGTGLPLPIPTDQGNEERHTSDDDRVFAWILE
LMHGPNREQALLELGKKREQYDELALILWHSFGVMTCLLQEIISVYPLLSPPQLSSPASN
RVCNALALLQCVASHDQTRNLFLNAHIPLFIYPFLNTSSKSRAFEYLRLTSLGVVGALVK
NDSPEVISFLLSTEIIPLCLSIMESGTELSKTVAIFIVQKILMDDMGLNYVCQTYERFFA
VSVVLSNMVAQLVALPPASSRLLKHVVRCYLRLSDNGRAREALRQILPEPLRDATFSYTL
RDDAGTKRCLAQLLVNLSDNYE
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgtacgccaacgtggcacgtcagcagggtggagctgaacagggtcctccaggcccgaac
tacgctcagctgccacagcatcagcatccgcaacaacaaccgcaacagccacaacaacag
cagcaacagcaacaacagcaacaacagcagttacatccacaacaggctcaagctcaagct
caagctcaaggtcaagctccgggtccgggtcagcctcagaatcatccacagtcacaatca
caacatcaacaacaacagcagcaacagcagcagccacaacaaaacccaggacaaccacat
cttatgagtcagggcccatcacagggtaaccttggaggtgggaatattggtgccaatatc
ggaggtaatggtactggactgcctgctggaatcagtgctagcgctttaaatatcatcaac
gcagccaattcatcagcgggtcaggctggaacaggtctacctttgccaattcccactgac
caaggaaatgaagaaagacacacttcagacgacgaccgggtgtttgcatggattctcgag
ctcatgcacgggccaaaccgcgagcaagcgttattggaactggggaaaaaacgtgaacag
tacgacgagctggctctgatattatggcattcgtttggtgtcatgacatgtcttttacag
gaaatcatctctgtttacccacttctgtcgcctcctcaattgtcatctccagcttcaaat
cgcgtttgtaatgcactcgcgttattacaatgtgtggcatctcacgatcaaactcgtaac
ttgttccttaatgcccatatcccactgtttatttacccatttcttaacacgtcgtccaaa
tcgcgtgcttttgagtatctaagactgacatcgttgggtgtcgtcggagctcttgtcaag
aacgattctcctgaagtcatttcgttcctgctgtccaccgagatcattcctctgtgtctc
agtatcatggaatcaggcaccgaattatcgaaaaccgtggctatctttattgttcagaag
attctcatggacgacatgggcttgaactacgtgtgtcaaacctacgaacggttctttgcc
gtatcggtcgtgctttccaacatggtcgctcaactggtagcactccccccagcctcttca
cggcttctcaagcacgtcgttcgctgctacctccgtctcagcgacaacggccgcgcccgc
gaggctctccgacaaatccttcctgagcccttacgcgatgccaccttctcctacaccctc
cgcgacgacgccggcacaaaacgctgtctcgcccagctgctcgtcaacctctccgacaac
tacgaatag

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