Sugiyamaella lignohabitans: AWJ20_66
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Entry
AWJ20_66 CDS
T05270
Symbol
CAF40
Name
(RefSeq) CCR4-NOT core subunit CAF40
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_66 (CAF40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_66 (CAF40)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AWJ20_66 (CAF40)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Rcd1
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
30037716
NCBI-ProteinID:
XP_018734319
UniProt:
A0A167CL68
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Position
A:complement(217960..219288)
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AA seq
442 aa
AA seq
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MYANVARQQGGAEQGPPGPNYAQLPQHQHPQQQPQQPQQQQQQQQQQQQQLHPQQAQAQA
QAQGQAPGPGQPQNHPQSQSQHQQQQQQQQQPQQNPGQPHLMSQGPSQGNLGGGNIGANI
GGNGTGLPAGISASALNIINAANSSAGQAGTGLPLPIPTDQGNEERHTSDDDRVFAWILE
LMHGPNREQALLELGKKREQYDELALILWHSFGVMTCLLQEIISVYPLLSPPQLSSPASN
RVCNALALLQCVASHDQTRNLFLNAHIPLFIYPFLNTSSKSRAFEYLRLTSLGVVGALVK
NDSPEVISFLLSTEIIPLCLSIMESGTELSKTVAIFIVQKILMDDMGLNYVCQTYERFFA
VSVVLSNMVAQLVALPPASSRLLKHVVRCYLRLSDNGRAREALRQILPEPLRDATFSYTL
RDDAGTKRCLAQLLVNLSDNYE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccaacgtggcacgtcagcagggtggagctgaacagggtcctccaggcccgaac
tacgctcagctgccacagcatcagcatccgcaacaacaaccgcaacagccacaacaacag
cagcaacagcaacaacagcaacaacagcagttacatccacaacaggctcaagctcaagct
caagctcaaggtcaagctccgggtccgggtcagcctcagaatcatccacagtcacaatca
caacatcaacaacaacagcagcaacagcagcagccacaacaaaacccaggacaaccacat
cttatgagtcagggcccatcacagggtaaccttggaggtgggaatattggtgccaatatc
ggaggtaatggtactggactgcctgctggaatcagtgctagcgctttaaatatcatcaac
gcagccaattcatcagcgggtcaggctggaacaggtctacctttgccaattcccactgac
caaggaaatgaagaaagacacacttcagacgacgaccgggtgtttgcatggattctcgag
ctcatgcacgggccaaaccgcgagcaagcgttattggaactggggaaaaaacgtgaacag
tacgacgagctggctctgatattatggcattcgtttggtgtcatgacatgtcttttacag
gaaatcatctctgtttacccacttctgtcgcctcctcaattgtcatctccagcttcaaat
cgcgtttgtaatgcactcgcgttattacaatgtgtggcatctcacgatcaaactcgtaac
ttgttccttaatgcccatatcccactgtttatttacccatttcttaacacgtcgtccaaa
tcgcgtgcttttgagtatctaagactgacatcgttgggtgtcgtcggagctcttgtcaag
aacgattctcctgaagtcatttcgttcctgctgtccaccgagatcattcctctgtgtctc
agtatcatggaatcaggcaccgaattatcgaaaaccgtggctatctttattgttcagaag
attctcatggacgacatgggcttgaactacgtgtgtcaaacctacgaacggttctttgcc
gtatcggtcgtgctttccaacatggtcgctcaactggtagcactccccccagcctcttca
cggcttctcaagcacgtcgttcgctgctacctccgtctcagcgacaacggccgcgcccgc
gaggctctccgacaaatccttcctgagcccttacgcgatgccaccttctcctacaccctc
cgcgacgacgccggcacaaaacgctgtctcgcccagctgctcgtcaacctctccgacaac
tacgaatag
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