Sugiyamaella lignohabitans: AWJ20_780
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Entry
AWJ20_780 CDS
T05270
Symbol
PRP22
Name
(RefSeq) DEAH-box ATP-dependent RNA helicase PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AWJ20_780 (PRP22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slb03041
]
AWJ20_780 (PRP22)
Enzymes [BR:
slb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AWJ20_780 (PRP22)
Spliceosome [BR:
slb03041
]
Complex C
Other components
Step II factors
AWJ20_780 (PRP22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
nSTAND3
AAA_30
AAA_19
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
30037850
NCBI-ProteinID:
XP_018735001
UniProt:
A0A167D5Z9
LinkDB
All DBs
Position
A:2469875..2473660
Genome browser
AA seq
1261 aa
AA seq
DB search
MDEIEKLEILSLVSRLTTELSNYVGVADKSLAEFILHLHSESHKETQAGLKDSEIGEDDV
VNVRIANFKAKLDENGASFPDTFIEHMDHLIASMHPEFRKAAKSNSRNGDANGTSSGNSS
TKNDYDGQSHRSAQEKEKIFRGLAIPDRPLGPSGGQRERSRSRSRSRSRSRSPNNTYNYT
RESTYDHHQQRHNRFDDRYDRRRNDHDDYDRDYGRDRDRGRKRYRSRSRSPSRSRSLLRD
PVVGDIYDARIANITNYGAFATLQGFETKRDGKSEPRGCGHASGGWGCAPDPAAPLASLE
SLRTRSQPSPAKQELRGLGRSPSRRRQNAREIGTNRAGLIHISAMRSGPRIEHPSDVVRR
GQLVKVKLMKIENGKLDLSMKAVDQETGLEILDARATGANGTGLGRDAGDGEVAANVGKR
RRKRLTSPERWEIRQLIASGAVSAADYPDLQEDIDDFTNTTEDLEPEIDVDIEVREEEPP
FLAGQTRQSLELSPIRVVKAPDGSLNRAAMTGAELAKERREARQLEQRQAELRLKEAKKQ
SHGESSDPFAARAAMSAAAAGDAAAATNNELASLIAAQEWKKANKNATYGKRVTMSIAEQ
RRSLPVYGLRQQLVQAVADNQILIIVGDTGSGKTTQITQYLYEEGFADHGKIGCTQPRRV
AALSVAKRVAEEVGCKVGDEVGYNIRFEDCTSSRTKIKYMTDGMLQREALLDPDMSQYSV
IMLDEAHERTIATDVLFALLKKAARRRPDLKLIITSATLDAEKFSEYFFECPILFIPGRT
FPVDIMYTKEPEFDYLEASLMTVLQIHLSEPAGDILVFLTGQDEIDTACETLYERMKSLG
DGIPELIILPVYSALPSEMQSRIFEPAPKGARKVVIATNIAETSITIDGIYYVVDPGFVK
VNAYDPKLGMDSLVISPISQAQANQRSGRAGRTGPGKCYRLYTESAFQNEMLPNTIPEIQ
RQNLSNTILMLKAMGINDLLHFDFMDPPPSNTMLTALEELYQLSALDSEGLLTRLGRKMA
DFPMEPAMAKVLIASVEGGCAEEVLTIVAMLSMQTIFYRPREKKEQADQKRMKFNDPTGD
HLTLLNVYNSWKRNGQSKAWCIENFIQERTMRRAQDVRTQLLSIMKKYRHRIESCGDNVD
KVRRVLCSGYFRNAARKDPQEGYKTLVEQTPVSLHPSSALFGKHAEYVIYHTLLLTTKEY
MQCVTTIDPKWLVEAAPTFFKVADPHNLSKRKRNEKIEPLFDRFAADKNDWRISAQKKAY
N
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatagaaaagcttgagatcctatcactggtatcgagactgacaaccgaactg
agtaattatgttggtgtagcagataagagcctggcggagttcattctccacctccatagc
gagagccataaagaaacgcaagccggacttaaagattcagaaataggtgaagacgatgtt
gtgaatgtgcgaatagcgaacttcaaggccaaactggatgaaaatggagccagctttcct
gatacttttatagagcatatggatcatttgattgctagcatgcatcccgagttcagaaag
gcagccaagtcaaactcacgtaatggagatgctaatggaacttccagtggcaatagcagc
actaagaatgattacgatggacaatcccacagatcagcacaagaaaaagagaaaatattc
cgaggtctggctattcctgacagacctttaggacccagtggcggccaacgagagagaagt
agaagtcgaagcaggagcagaagcagaagcagaagtccgaataatacatacaattacacc
agagaaagcacgtacgaccatcatcaacaacgccacaatcgcttcgacgaccgctatgac
cgtcgtcggaacgaccacgacgactatgacagggactacggccgagaccgcgatcgtgga
cgtaaacggtaccgatcacgatctcgctcgccgtctcgatcccgctcactgcttcgagac
cctgtcgtaggagacatctacgatgcccgcatcgccaacatcaccaactacggcgcattt
gcgaccctccaaggattcgaaaccaaacgagacggtaagtctgaacctcgggggtgtgga
catgcctccggcggctggggctgcgccccagaccccgctgctcctctcgcttcgctcgag
tcgttgcgtacacggtcccagccatctcctgcgaagcaggagctacggggtctggggcgg
agccccagccgccggaggcagaatgcacgtgagattggaactaacagagcaggtctgatt
catatttcggcgatgagaagtggcccgagaattgagcacccgtcggatgtagtgagacgg
ggacagctggtgaaggtgaagttgatgaagatcgagaatggaaagctggatctgtcgatg
aaagcggtggatcaggagactgggttggagatcctggatgccagggcgactggtgctaat
ggcacgggtcttggtagggacgctggagatggtgaggtggcggcgaatgtcggtaaaagg
aggaggaaacgactgacttcgccagagagatgggagatacggcagctgattgcgagtggt
gcggtgtcagcagctgattatcccgaccttcaggaggatattgacgatttcacgaacacg
acagaggatttggaaccggagattgatgtggatatcgaggtgcgagaggaggaaccgccg
tttttggcgggtcagacgagacagagtctggaactgagtcctatcagggtagtcaaagcg
ccagatgggtcgctgaatagagcagctatgacgggtgctgaactcgcaaaggagaggaga
gaggcgagacagctggaacagcgacaggccgagctgcgactcaaggaggcgaagaaacaa
agccatggcgagtcgagcgacccattcgccgcaagagctgctatgtctgctgctgctgct
ggtgatgctgctgctgctacaaataatgagctggcgtcactgatagcggcacaagagtgg
aagaaggccaacaaaaatgcgacttatggcaaacgggttaccatgagcattgccgaacag
cgaaggtctcttcctgtgtatggacttcgtcaacagttggttcaggcggtggctgacaat
cagattctaattattgttggtgatacaggttcaggaaaaaccacccaaatcactcagtac
ttgtatgaggaagggtttgccgaccatggaaagatcggttgtacacagccaagacgtgtg
gctgcattgtcagttgcgaagagagtagctgaggaagttggatgtaaagttggtgatgaa
gttggttataacattcgatttgaggattgcaccagcagtaggacgaaaatcaaatatatg
acagatggtatgctacaaagagaagctctactagatccagatatgtcgcagtactcagtg
attatgcttgatgaggcccacgaaagaactatagctacagatgtgttgtttgccctgctg
aaaaaggctgctcgtcgccgacccgatttaaaactgattatcacatcagcaactttggac
gcagaaaagttttccgagtacttttttgaatgtcctattttatttattcctggaagaaca
tttccagttgatatcatgtatactaaagagcccgagttcgactatctcgaggcgtcgctt
atgacggtgttacaaatccatttatcagaaccggcgggagatatcctggtgtttttaact
ggtcaagatgaaatcgacactgcttgtgaaactctttatgaaagaatgaaaagtctgggt
gatggtattcccgagctgattattctcccagtatattcagctctaccaagtgaaatgcag
agtcgtattttcgagcctgcccccaaaggagctagaaaagtagtcattgctactaatatt
gccgaaacatctattactatcgacggtatttactatgtagtggatcctgggtttgtcaaa
gtcaatgcttatgatcctaaactcggtatggactcgctggtgatatctcccatcagtcag
gctcaagccaatcaacggtcaggtcgtgctggtcgtactggacctggtaaatgctaccgt
ctgtatacggaatcagcctttcaaaatgagatgctaccgaacacaattccagagattcaa
cgacagaacttgtccaatacaattctcatgctcaaagctatgggtataaacgacctgtta
catttcgattttatggacccaccaccgtctaatacaatgttgacggccttggaagagttg
tatcaattatcagcacttgatagcgaaggattattaacaagactaggaaggaaaatggcc
gacttccctatggaaccagccatggccaaggtcctaattgcgtctgtagaaggaggatgt
gctgaagaagtgcttacaattgtagccatgttatcaatgcagacaattttctatcgacca
cgagagaaaaaagaacaagctgaccagaaacgaatgaagtttaacgatcctactggcgac
cacctgactcttttgaatgtatacaattcgtggaaacgcaacgggcagtcaaaagcgtgg
tgtattgaaaatttcattcaagaacgaacgatgcgacgagctcaagacgtccgtacacag
ttgttatcgattatgaagaagtaccgtcaccggatcgagagttgtggtgacaatgtcgat
aaagtgcgacgagttctctgtagcggatatttccgcaacgcagcacgaaaagatccgcaa
gaaggatacaaaacacttgtggaacaaacacccgtgtcacttcatccgtcctcagcactg
tttggaaaacacgccgagtacgttatctaccacacacttcttctcaccaccaaagagtac
atgcaatgtgtgacaactatcgaccccaaatggctcgtcgaagcagcacccaccttcttc
aaagtggccgacccacacaatctcagcaaacgcaaacgcaacgagaaaatcgagcccctc
ttcgaccggttcgcggcagacaaaaacgactggcgcatcagcgctcaaaaaaaggcatat
aactaa
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