Streptomyces lydicus 103: SL103_21435
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Entry
SL103_21435 CDS
T04699
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SL103_21435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slc03400
]
SL103_21435
Enzymes [BR:
slc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SL103_21435
DNA repair and recombination proteins [BR:
slc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SL103_21435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOP48457
UniProt:
A0A1D7VNX5
LinkDB
All DBs
Position
complement(4915127..4916011)
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AA seq
294 aa
AA seq
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MSPITVVEGRRLPLTNLDKVLYPETGTTKGEVVHYCTTTAEPLLAHLHDRPLSFLRYPDG
PDGQRFFTKNVPPGTPSWVKTCEVPHSTSGPTRQALLQDLPSLVWAANLVVELHTPQWTC
RTPGTADRLVLDLDPGDPATVVECCVAAQWLHERLAADGLEVFAKTSGSKGLHLVVPIEP
TPSERTTAYARTLAVEAARALPDLVVHKMAKALRPGKVFIDFSQNAAAKTTAVAYTLRAR
ATPTVSAPVTWDEIADCDDPEQLSFLFGEIGPRIERYGDLHAPLLDPDRARPLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatcaccgtcgtggaggggcggcgccttccgctgaccaacctcgacaaggtc
ctttatcccgagaccggcaccaccaagggtgaggtggtccactactgcaccaccaccgcg
gagccgctgctcgcgcacctccacgaccggccgctgtccttcctgcgctaccccgacggg
cccgacggccagcgcttcttcaccaagaacgtgccgcccggcacgccctcctgggtgaag
acctgcgaggtcccccattcgacgtccgggcccacccggcaggccctgctccaggacctg
ccgtcactcgtctgggccgcgaacctcgtcgtcgaactgcacaccccgcagtggacctgc
cgcacgccgggcaccgccgaccgcctcgtcctcgatctggaccccggcgaccccgccacc
gtcgtcgagtgctgcgtcgcggcgcagtggctgcacgagcggctggccgccgacggcctg
gaggtcttcgccaagaccagcggctccaaggggctgcatctggtcgtgccgatcgagccg
accccgtcggagcggaccaccgcctacgccaggaccctcgccgtcgaggcggccagggcc
ctgccggacctcgtcgtgcacaagatggccaaggcactgcggcccggcaaggtcttcatc
gacttctcccagaacgcggccgccaagaccaccgccgtcgcctacaccctgcgggcccgc
gccacccccaccgtctccgccccggtcacctgggacgagatcgccgactgcgacgacccg
gagcaactcagcttcctcttcggcgagatcggtccccgcatcgagcgctacggcgatctg
cacgcaccgctcctcgacccggaccgggcccgaccgctgccctga
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