KEGG   Streptomyces lydicus: SL103_24545Help
Entry
SL103_24545       CDS       T04699                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
slc  Streptomyces lydicus
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:slc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SL103_24545
Enzymes [BR:slc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SL103_24545
DNA repair and recombination proteins [BR:slc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SL103_24545
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
5636076..5637047
Genome map
AA seq 323 aa AA seqDB search
MAPTAEHGSAPYPVIRPMLATIGPLPDELEEAEWAFEAKWDGARCIVNTPGDGTIRLVTR
AGNDATMTYPELAPLGEQLRGRPAVLDGEVVVLDARGRPDFGLLQRRMGVVNPRRTARLA
MEHPVHLVLFDVMHLGGSLLGMPYHERRSLLSGLRLRGPNWSSPAYLAGHAQQAWEASLQ
GGLEGVVAKRLGSAYLPGVRSPEWRKTKHLQTLDVIIGGWTEGHGSLAGLPGAVLAGVAE
PAGLRYVGSVGSGLSDRERHGLAQYLGVIPLDRSPFLNPVDASGVHWTEPRLVAEITLTG
WTAAGRLRHPVWHRLRPDLTRLG
NT seq 972 nt NT seq  +upstreamnt  +downstreamnt
atggccccgacagccgagcacggctcggccccgtaccccgtgatccggccgatgctggcc
acgatcgggccgctgcccgacgagctggaggaggcggagtgggctttcgaggccaagtgg
gacggtgcccgctgcatcgtcaacacccctggtgacggcacgatccggctggtcacccgg
gcgggcaacgacgcgaccatgacgtatccggagctggctcccctcggtgagcagctgcgc
ggacggcccgcggtgctggacggcgaggtggtggtgctggacgcgcgcgggcggccggac
ttcgggctgctgcaacggcggatgggcgtggtgaacccgcgccgcacggcccggctggcc
atggaacacccggtgcacctggtgctcttcgacgtcatgcacctgggcggttcgctgctc
ggcatgccgtaccacgagcgccggtccctgctgtcggggctgcggctgcggggccccaac
tggtcgtcgcccgcctacctcgcggggcatgcccagcaggcgtgggaggcatcgctgcag
ggtgggctggaaggcgtcgtggccaagcggctgggctcggcgtatctgccgggcgtccgc
tcacccgagtggcgcaagacgaagcatctgcagaccctcgacgtgatcatcgggggctgg
acggagggccacggcagcctcgccggactgcccggtgcggtgctggccggcgtcgcggaa
ccggccgggctgcgctacgtcggctcggtcggttcgggactgtccgaccgggaacgccac
gggctcgcccagtatctgggggtgatcccgctggaccgctccccgttcctcaacccggtg
gacgcgtcgggcgtgcactggaccgaaccccggctggtcgccgagatcacgctcaccggc
tggaccgcggcggggcggctgcggcatccggtctggcaccggctccggcccgatctgacg
cggctcggctga

DBGET integrated database retrieval system