Streptomyces lydicus A02: T261_0647
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Entry
T261_0647 CDS
T03756
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sld
Streptomyces lydicus A02
Pathway
sld03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T261_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sld03400
]
T261_0647
Enzymes [BR:
sld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T261_0647
DNA repair and recombination proteins [BR:
sld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
T261_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AJT62336
LinkDB
All DBs
Position
complement(666478..667374)
Genome browser
AA seq
298 aa
AA seq
DB search
MSPITVVEGRRLSLTNLDKVIYPETGTTKGEVVHYCTITADPLLAHLHDRPLSFLRYPDG
PDGQRFFTKNVPPGTPSWVQTCEVPHTTSGPTRQVLVQDLSSLVWAANLVVELHAPQWTS
GAPGRADRLVLDLDPGAPATVVECCTAAEWLHERLAADGLGVWAKTSGSKGLHLVVPIEP
TPSEWTTAYARSLAVEAQRALPDLVVHKMTKALRPGKVFIDFSQNAAAKTTAVAYTLRAR
ATPTVSTPVTWDEIADCTDPAQLTFRFEAIAPRLARHGDLLAPLLDPGRARPLPHRPR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatcaccgtcgtggaggggcggcgcctctcgctgaccaacctggacaaggtc
atctatcccgagaccggtacgaccaagggcgaggtggtgcactactgcaccatcaccgcg
gacccgctgctcgcgcatctccacgaccggccgctctcgtttctgcgctatcccgacggg
cccgacggccagcgcttcttcaccaagaacgtgccgcccggcaccccctcctgggtgcag
acctgcgaggtgccccatacgacctccgggcccacccgccaggtcctggtgcaggacctc
tcctcgctggtctgggccgcgaacctggtcgtcgaactgcacgcaccccaatggaccagc
ggggcaccgggccgcgccgaccgcctcgtcctcgacctcgaccccggcgccccggccacc
gtcgtcgaatgctgcaccgcggccgagtggctgcacgagcggctcgcggcggacggcctc
ggcgtctgggcgaagaccagcggttccaagggcctgcacctcgtcgtgcccatcgagccg
accccctcggaatggaccacggcctacgccaggagcctcgccgtcgaggcccagcgggcc
ctcccggacctggtcgtccacaagatgaccaaggcgctgcgccccggcaaggtcttcatc
gacttctcccagaacgccgccgccaagaccaccgccgtcgcctacaccctgcgtgcccgc
gccacccccaccgtctccaccccggtcacctgggacgaaatcgcggactgcaccgacccc
gcccaactcaccttccgcttcgaggccatcgcgccccgtctcgcccgccacggcgatctg
ctcgccccgctcctggatcccggccgcgcccggccgctaccccaccggccccggtaa
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