Streptomyces liangshanensis: HA039_02340
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Entry
HA039_02340 CDS
T07519
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slia
Streptomyces liangshanensis
Pathway
slia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HA039_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_02340
Enzymes [BR:
slia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HA039_02340
DNA repair and recombination proteins [BR:
slia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HA039_02340
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Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
AhtL-like_1st
Motif
Other DBs
NCBI-ProteinID:
QIQ01289
UniProt:
A0A6G9GT91
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Position
complement(521943..522902)
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AA seq
319 aa
AA seq
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MDVVGVKGAGATDSGATDSVRAGNRTVPIHRPAKVLFPATGDDTGLTKADLVEYYRSVAP
YMLPELKGRPLMLERHPDGLDGPRFMQKNTPDGYPEWVRRAELAKKGGTVTHPVCDNTAT
LVFLADQACLTFHRWQSRADRPDAPDRLVFDLDPAEDTFEPVRRAATQLGELLGELRLPS
ALLTTGSRGLHVIVPLDGRSGFDEVRAFAGDVARTLAARDPDHLTTEVRTGARGGRLYLD
IQRNGYAQTAVAPFSVRAREGAPVATPISWDQLADPRVTARRWTVRDVLDQARTRPWSQV
PARGRSLTPARKLLQSLKP
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggtcggggtgaagggcgccggggcgacggactcgggggcgacggattccgta
cgggcggggaacaggaccgtaccgatccatcgcccggcgaaggtgctgttccccgccacc
ggcgacgacacgggcctgacgaaggccgatctggtggagtactaccggtccgtcgcgccg
tacatgctgccggagttgaagggcaggccgctcatgctggagcggcacccggacgggctc
gacggcccccgcttcatgcagaagaacaccccggacggctatccggagtgggtgcgcagg
gccgaactggccaagaagggcgggacggtcacccaccccgtctgcgacaacaccgccacc
ctggtcttcctcgccgaccaggcgtgcctgaccttccaccgctggcagtcccgcgccgac
cgtcccgacgcccccgaccggctggtcttcgacctcgacccggcggaggacaccttcgag
cccgtccggcgcgcggccacccagctcggcgaactcctcggcgaactgcggctgcccagc
gccctgttgacgaccggctcccgaggactgcacgtgatcgtcccgctggacggccgcagc
ggcttcgacgaggtgcgcgccttcgccggcgacgtcgcccggacactggccgcccgcgac
cccgaccacctgaccacggaggtacggaccggggcgcgcggcggccgcctgtacctggac
atccagcgcaacggatacgcccagacggcggtggcgccgttctccgtacgggcgcgggag
ggcgccccggtcgccacccccatcagctgggaccagctggcggacccgcgggtgacggcg
aggcgctggacggtacgggacgtcctggaccaggcgaggacgcgcccgtggtcgcaggtc
ccggcccgcggcaggtccctgaccccggcccgcaaactcctccagtccctgaagccctga
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