Syntrophothermus lipocalidus: Slip_1509
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Entry
Slip_1509 CDS
T01253
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Slip_1509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_1509
Enzymes [BR:
slp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Slip_1509
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Slip_1509
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADI02272
UniProt:
D7CNI7
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All DBs
Position
complement(1566306..1567244)
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AA seq
312 aa
AA seq
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MVMPVIKPGTPFIPMEPVFHPEAFDDENYGFQIKWDGTRIIAHLDGPVELFNRKMKKRTA
QYPEVADALKEALRGTSAVLDGEIVTLSGDKPNFHQLMRRDRATDARTINHLATRIPVTY
VVFDILYLKDKCLADLPFWQRDGILRSTLKSSDPVVVTDTFKGRGKALFAIVREKGLEGI
VAKRLESTYQIGKKSAKWLKIKNRQRTTALVGGFVAEGKQVRSLFLGQLVEGDLIYIGRA
SSGLDEETGRALYDFLSRRAENTCPFVNPPAVERRENLVWVLPSASVEVEFYDYTEKGYL
RHPVIKRVELGL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgcctgtgataaagccgggaacccccttcattcccatggaaccggtcttccac
ccggaggcctttgacgatgaaaactacggttttcagataaagtgggacggaacaaggata
atagcccacctggacgggccggtggaacttttcaaccggaagatgaaaaagcgcaccgcc
cagtatcccgaagtggccgatgcgttgaaggaggcccttaggggcacaagcgccgtgctg
gacggggaaatcgtaaccctttccggcgataagcccaatttccaccagctgatgaggcgt
gaccgggccaccgacgcgcgcaccataaaccacctggccaccagaataccggtgacctat
gtggtctttgacatcctgtacctaaaagataagtgcctggcggaccttcccttttggcag
cgggacgggatattgagatccaccttaaaatcttcggacccggtggtggtaaccgatacc
ttcaagggacgtgggaaggccctttttgcaatcgtcagggaaaagggtctggagggcata
gtggccaaaagactggaaagtacctaccagatcggaaagaaaagtgcaaaatggcttaaa
attaaaaaccgccagcggaccaccgccctggtgggggggtttgtagcagaagggaagcag
gtgcggtccctctttctcggccagcttgtggaaggggacttaatctatataggccgggct
tccagcggcctcgatgaggaaacgggcagggctctttacgactttctatcccggagggcc
gaaaatacctgtcccttcgtcaatccgcccgccgtggaaagaagggaaaatctcgtatgg
gtactaccgtcagcttccgttgaagtggaattttacgactacacggagaaaggttatctc
agacacccggtcatcaagcgggtggaactggggttatga
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