Sander lucioperca (pikeperch): 116052183
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Entry
116052183 CDS
T07345
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116052183 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116052183 (taf5l)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116052183 (taf5l)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116052183 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
116052183 (taf5l)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116052183 (taf5l)
STAGA complex
116052183 (taf5l)
TFTC complex
116052183 (taf5l)
SAGA complex
116052183 (taf5l)
SLIK complex
116052183 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
NBCH_WD40
ANAPC4_WD40
RMC1_N
WD40_like
PROPPIN
Nbas_N
Motif
Other DBs
NCBI-GeneID:
116052183
NCBI-ProteinID:
XP_031158568
Ensembl:
ENSSLUG00000013839
LinkDB
All DBs
Position
4:21859219..21866176
Genome browser
AA seq
601 aa
AA seq
DB search
MKRVRTEQIQHAVTQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTAQTESGCANIVSAA
PCQSDPQQYETQYSRLRSFLSETEISWAKEVSSLLYPLFVYLHLDMVRCGMKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNGALCRALSTHLQVEVSASRRTDYQLYGAAGGPTAAPNSTSSSWAGLDGAEGGEGVEV
PAGIPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQTLNTAEVSADSRLLAAGFD
SSTVKLWSLRARKLKAKPHRADVSLIHLACDVLEEEADEEDASGSEIKTLRAHSGPVFRT
AFLTDSSGLLSCSEDTTIRYWDLGSFANTALYRGHAYPVWDVDVSPCSLYFASGSHDRTA
RLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHR
GPVLSLAFSPNGKYLASAGEDQRVKLWDLASGALFKDLRGHTDSVTSLSFSPDSSLVASS
SIDNSVRVWDIRNSHGGTPADGSSGELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAE
P
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgttcgcactgagcagatccagcatgccgtgactcagtacctgaagcggagg
cagtatgtggacacggatggctccctgaaaggagccaagctcttccagtcagcggaagag
atggctgccagcctcacagcgcagacagagtcgggctgtgccaacatcgtctcggctgct
ccctgccagtccgacccccagcagtacgagacccagtactccaggctgcgctcctttctg
tcagaaactgaaatatcctgggcgaaggaggtgagcagcctcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgtggcatgaagggggccgtggacggtttctacagc
cgtttccacggcgcctttctccaggacggcgagcagcgcgccaccatcgagcagctccgc
cacgttctcaccgcgcaggacgtcgccgccaaccccaagctgagcgccttcctggagcac
aagtacgtggtccacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacggcgccctctgccgggctctcagcacacacctgcaggtggaggtctccgcc
tcgaggcgcacagactaccagctgtacggcgctgccggcgggccgaccgccgccccgaac
tccacctcctcctcctgggcgggattggacggggcggagggcggcgagggggtggaggtc
cccgcagggatcccgcagagcgaggcggccctggaggcgctgcaggactgcatcaagaaa
gtccgcgagggccccccgacgctcaccaccgtgtgcttctacgccttccaccacacggag
cagacgctgaacacggccgaggtgtcggccgacagccggctgctggccgccggcttcgac
agctccacggtgaagctgtggagcctccgggccaggaagctgaaggccaaaccgcatcgg
gccgacgtgtcgctcatccacctggcctgcgacgtactggaggaggaagcagatgaagag
gacgcctccggcagcgagataaagacgctgcgagcccacagcggcccggtgtttcgcacc
gccttcctgacggacagctcgggcctgctctcctgctccgaggacaccaccatccgctac
tgggacctgggcagcttcgccaacacggcgctgtaccggggccacgcctacccggtgtgg
gacgtggacgtcagcccctgcagcctctacttcgccagcggctcgcacgaccgcaccgcc
cgcctctggaccttctctcgcacttacccgctgcggctctacgccggccacctcgccgac
gtcgactgcgtcaagttccacccaaactccaactacctggccaccggctccacggacaag
actgtccgtctgtggagcacccagcagggggcgtccgttcgcctcttcaccggccaccgc
ggcccggtgctgtccctcgctttctcccccaacgggaagtacttggcgtcggccggcgag
gaccagagggtgaagctgtgggacctggcgtcaggggcgttgttcaaagacctgcgcgga
cacacggacagcgtcaccagcctgtcctttagccccgacagcagcctggtggcgtcgtcg
tctatagacaactcggtgcgggtgtgggacatccggaactcccatggcgggacgccggcc
gacggatcgtccggcgaactggtgggactgtacacggggaacaccagcaacgtgctcaac
gtgcagttcatggcctgtaacctgctgctggtgacggggaccgcacaggagaaagcagaa
ccgtag
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