Sander lucioperca (pikeperch): 116064427
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Entry
116064427 CDS
T07345
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
sluc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116064427 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116064427 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116064427 (prpf19)
04121 Ubiquitin system [BR:
sluc04121
]
116064427 (prpf19)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116064427 (prpf19)
Enzymes [BR:
sluc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116064427 (prpf19)
Spliceosome [BR:
sluc03041
]
Complex B
Other components
Prp19 complex
116064427 (prpf19)
Complex C
Prp19-CDC5 complex
116064427 (prpf19)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
U-box type E3
116064427 (prpf19)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
116064427 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
U-box
PROPPIN
Nup160
eIF2A
Cytochrom_D1
Ge1_WD40
zf-Nse
DUF2518
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
116064427
NCBI-ProteinID:
XP_031175502
Ensembl:
ENSSLUG00000013148
LinkDB
All DBs
Position
1:complement(34749848..34758130)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAVPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASIPGILALDLCPSDTNKVLT
GGADKNVVVFDKSEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDNTIRVWSVAGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaggtgccggagcacccgtgcgtctccccggta
tccagccaggtgtttgagcgcaggctgatcgagaagtacatcgcagagaatgggaccgac
ccgatgaacggacaacccctgtctgaggagcagctcgtagatatcaaagtgtcccatcct
attagaccaaaggctccatcagcaacaagtattcctgccattcttaagtcccttcaagat
gagtgggatgctgttatgcttcacagcttcaccctgcggcaacagctgcagactactcgc
caagaactgtctcatgctctctaccaacatgatgctgcctgcagagtcatcgctcgactc
accaaagaggtcaccgctgcgagagaagctcttgccacactcaaaccccaggctggattg
gttgcccctcaggcagtccccgcctctcagccagccgcagcaggtgctggtggagagccc
atggagattagtgaacaggtgggaatgaccccagagatcatccagaagctccaagacaaa
gctactatcctcactacagaaagaaagaagagaggaaaaactgtcccagaggagctcgtt
agagctgaggatctcagcaaataccgccaagtggcctcgcatgctggtcttcatagtgcc
agcatccctggtattctggctctggatctgtgtccctcagacaccaacaaagttctcacc
ggtggagctgataagaacgtggtggtgtttgacaagagcgaggaacagattgttgcaaca
ctgaagggtcacaccaagaaggtcacctctgtcatttatcatccatcccagtccgtggtc
ttttctgcgtctccagacaacaccatccgtgtgtggtctgtcgccgggggtaactgtgtc
caggttgtgcgtgcccacgaggcaggtgtcactggactctctctacacgctactggggac
tacctgctcagctcctctgaggatcagtactgggccttttctgatatccagactggtcga
gtcctcaccaaagttactgatgaaagtgctggctgtgctctaacctgtgctcagttccac
cctgatggtcttatttttggcactgggacggctgattcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttcccaggccactctggccccgtcacctccattgct
ttctctgagaacggatactatctggccacaggtgcccaggatagctctctgaaactgtgg
gatctgaggaagctgaagaacttcaagaccatcactctggacaacaactatgaggtgaag
tcccttgtgtttgaccagagtggaacttacctggctgttggagggtctgacatccgtgtg
tacatctgcaaacagtggtctgaggtcctcaacttcacagaccatacaggattggtgact
ggagtggcctttggagagaacgctcagttcctcacctctgcaggaatggacagaagtctc
aaattttacagtttgtag
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