Streptomyces lividans: SLIV_02570
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Entry
SLIV_02570 CDS
T03222
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slv
Streptomyces lividans
Pathway
slv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SLIV_02570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slv03400
]
SLIV_02570
Enzymes [BR:
slv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SLIV_02570
DNA repair and recombination proteins [BR:
slv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SLIV_02570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AIJ11541
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All DBs
Position
539027..540007
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AA seq
326 aa
AA seq
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MELPPIPPMLATPGTLPPAGQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY
PELAPLATALGGTPAVLDGEVLALDEQGRADFQLLQSRMGLAHTPARAAHRAAKVPVHLV
LFDALHLAGRSLLRLPYTGRRERLTDLGLNGPSWSTPAALVGHGAQALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAGRLRYV
GGVGTGWSAGERTELAALLAAAASDVCPFDPVPRVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEESAADLPDDLA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtggagctgccgccgatccctccgatgctcgccacccccggcaccctgccgcccgccggg
caggacacgcgctgggcctacgagaccaagcaggacggacagcgcgtggtggtctacctg
cccggcgacggaagcgtcctgctgcgtgcccgctccggccaggacatcaccgccgcctat
ccggaactggctccgctcgccaccgcgctcggcgggacccccgccgtactggacggggag
gtgctggccctggacgaacagggccgtgccgatttccagttgctccagtcccggatgggc
ctcgcgcacaccccggcccgggcggcgcaccgggcggcgaaggtccccgtccacctggtg
ctcttcgacgccctgcacctggcgggccgctccctgctgcgcctgccctacaccggccgc
cgtgagcggctcacggacctcgggctgaacgggccgtcgtggtcgaccccggccgcgctg
gtcgggcacggcgcacaggccctgcgggccacccgcgagcacggcctggaggggctggtg
tgcaagcggctggactcggtgtacgagcccggggtccgctcccgggcctggatcaagatc
cgcaacatgcgcagcgaggacgtcgtggtgggcggctggctgcccggcaaggggcggctc
ggcggtctcccgggcgccgtcctggtcggccagcgcgccgctggccggctgcgctacgtc
ggcggggtcggcaccggttggagcgcgggcgagcgcaccgagctggccgcgctgctggcg
gccgcggccagtgacgtctgccccttcgacccggtgccgcgggtgccgggggcgcgctgg
gtcgtgccccggctggtcggcgaggtccgctacagcacccgcacccgggagggcatgctg
cgccagccgtcctggctcaggctccgcccggacctggcacccgaggagtcggccgcggac
ctgccggacgacctggcgtga
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