Solanum lycopersicum (tomato): 778316
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Entry
778316 CDS
T02665
Name
(RefSeq) U1 small nuclear ribonucleoprotein C-like
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
778316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
778316
Spliceosome [BR:
sly03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
778316
Complex B
778316
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-U1
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
778316
NCBI-ProteinID:
NP_001234106
UniProt:
Q53U41
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Position
6:complement(2799934..2804747)
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AA seq
197 aa
AA seq
DB search
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKGNVRTYYQQFEAQLNQSLIDQKVKEHLGA
FRPVGLPFPQLRPGLPGLPTPPMQMPGNPQMPAGAQWVPGMRPPVLPRPMPGLPGYAPPP
MPQMLAPPGAPMPGQVNNMQRPAGPPSAVPGSMGMPAPTGGPPMFAPPPVYQGSTTVPTT
GGVDNSSTNAQAADSNQ
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggtattactgtgactactgtgatacttacttgacacatgattctccttctgtt
agaaagcagcataatgcagggtacaaacacaagggaaatgttcgaacttattatcaacaa
tttgaggcacaactgaatcaaagtctaattgatcaaaaagtcaaggaacatctaggggcc
tttagaccagttggccttccttttcctcagctaaggcctggtcttcctggtcttccaact
cctccaatgcagatgcccggcaaccctcaaatgccagctggtgcccaatgggtccctggt
atgcggcctccggtgcttcctaggcccatgcccggtcttccaggttatgcacctccacca
atgcctcagatgttggcacctcccggtgctcctatgcctggtcaagtcaataatatgcaa
agacctgccggtccaccaagtgcagttccaggaagtatgggaatgcctgctcctactggt
ggccctccaatgtttgcaccacctcccgtgtatcaaggaagtaccactgtgccaacaacc
ggaggagttgataattccagtaccaacgctcaagctgccgactctaaccaatag
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