Streptomyces avermitilis: SAVERM_1934
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Entry
SAVERM_1934 CDS
T00126
Symbol
alkA1
Name
(GenBank) putative ADA-like regulatory protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAVERM_1934 (alkA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sma03000
]
SAVERM_1934 (alkA1)
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_1934 (alkA1)
Enzymes [BR:
sma01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SAVERM_1934 (alkA1)
Transcription factors [BR:
sma03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SAVERM_1934 (alkA1)
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAVERM_1934 (alkA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
UBA_6
Motif
Other DBs
NCBI-ProteinID:
BAC69645
NITE:
SAV1934
UniProt:
Q82LS6
LinkDB
All DBs
Position
complement(2364468..2365934)
Genome browser
AA seq
488 aa
AA seq
DB search
MHIDSERCVRAVRSKDARFDGWFFTAVLTTRIYCRPSCPVVPPKPANMTFYPSAAACQQA
GFRACKRCRPDTSPGSPEWNQRADLVARAMRLIGDGVVDREGVPGLATRLGYSTRQIERQ
LLAELGAGPLALARAQRAQTARLLIETTSLPMAEIAFAAGFSSIRTFNDTVREVFALSPS
ELRGRLPKKTVVSPGALTLRLPFRAPLNPDNLFGHLAATAVPGVEEWRDGAYRRTLRLPY
GHGIVALTPAADHIGCRLSLSDLRDLPVAISRCRRMLDLDADPVAIDDQLRADPLLAPLV
DKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVTAHGEAVTDPEGGLTHLFPA
PEALAAVAPESLAMPRTRRTTFTTLVRQLAEGGLHLGVESDWEETRARLLSLPGFGPWTA
DVIAMRALGDPDAFLPTDLGIRRAAEELGLPSTPAALTARAAAWRPWRAYAVQYLWATDS
HPINFLPV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcgacagtgagcgctgcgtgcgcgccgtccggtccaaggacgcgcggttcgac
gggtggttcttcacggcggtcctgaccacgaggatctactgccgtccgagctgcccggtg
gtgccgccgaagccggcgaacatgacgttctacccgagcgcggcggcctgccagcaggcc
ggtttccgggcctgcaaacgctgccgcccggacaccagccccggctcgcccgagtggaac
cagcgcgccgacctcgtcgcccgcgccatgcgcctgatcggcgacggcgtggtggaccgc
gagggcgtgcccggcctcgccacccggctcggctacagcacccgccagatcgaacgccag
ctcctcgccgaactcggcgcgggcccgctcgcgctcgcccgggcccagcgcgcccagacc
gcccgcctgctcatcgagacgaccagcctccccatggcggagatcgccttcgcggcgggc
ttctcctcgatccgcaccttcaacgacaccgtgcgcgaggtcttcgccctctccccgagc
gagctgcgcggcaggctcccgaagaagacggtcgtgtcccccggcgctctcacgctccgc
ctccccttccgcgccccgctcaaccccgacaacctcttcggccacctcgcggcgaccgcc
gtacccggagtggaggaatggcgggacggcgcgtaccggcgcaccctgcgcctgccgtac
gggcacgggatcgtcgccctgacccccgccgccgaccacatagggtgccgcctctccctc
agcgacctgcgcgacctgcccgtcgccatcagccgctgccgccgcatgctcgacctggac
gccgacccggtcgccatcgacgaccagttgcgcgccgacccgctgctcgccccgctcgtc
gacaaggcgccggggcggcgggtgccgcgtaccgtcgacgaggccgagttcgcggtacgg
gccgtgctgggccagcaggtgtccacggccgcggcccgtacccacgcggcccgcctggtc
accgcgcacggcgaagcggtgaccgaccccgaggggggcctcacccacctcttcccggcc
cccgaggcgctggccgccgtcgcccccgagtcgctcgcgatgccccgtacccgccgcacc
accttcaccacgctggtccgccaactggccgagggcggacttcatctgggcgtggagagc
gactgggaggagacccgcgcccggctcctgtccctccccggcttcggcccctggaccgcg
gacgtcatcgcgatgcgcgccctcggcgaccccgacgcgttcctgcccaccgacctcgga
atccggcgcgcggccgaggagttgggcctgccgtccacaccggccgcgctcaccgcacgc
gcggcggcctggcggccgtggcgggcgtacgcggtccagtacctgtgggcgacggacagc
cacccgatcaacttcctgccggtgtga
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