Serratia marcescens subsp. marcescens Db11: SMDB11_3417
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Entry
SMDB11_3417 CDS
T03985
Symbol
lpdA
Name
(GenBank) lipoamide dehydrogenase, E3 component is partof three enzyme complexes
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac00010
Glycolysis / Gluconeogenesis
smac00020
Citrate cycle (TCA cycle)
smac00260
Glycine, serine and threonine metabolism
smac00280
Valine, leucine and isoleucine degradation
smac00310
Lysine degradation
smac00380
Tryptophan metabolism
smac00620
Pyruvate metabolism
smac00630
Glyoxylate and dicarboxylate metabolism
smac00640
Propanoate metabolism
smac00785
Lipoic acid metabolism
smac01100
Metabolic pathways
smac01110
Biosynthesis of secondary metabolites
smac01120
Microbial metabolism in diverse environments
smac01200
Carbon metabolism
smac01210
2-Oxocarboxylic acid metabolism
smac01240
Biosynthesis of cofactors
Module
smac_M00009
Citrate cycle (TCA cycle, Krebs cycle)
smac_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
smac_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
smac_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SMDB11_3417 (lpdA)
00020 Citrate cycle (TCA cycle)
SMDB11_3417 (lpdA)
00620 Pyruvate metabolism
SMDB11_3417 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
SMDB11_3417 (lpdA)
00640 Propanoate metabolism
SMDB11_3417 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SMDB11_3417 (lpdA)
00280 Valine, leucine and isoleucine degradation
SMDB11_3417 (lpdA)
00310 Lysine degradation
SMDB11_3417 (lpdA)
00380 Tryptophan metabolism
SMDB11_3417 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SMDB11_3417 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smac04147
]
SMDB11_3417 (lpdA)
Enzymes [BR:
smac01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SMDB11_3417 (lpdA)
Exosome [BR:
smac04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SMDB11_3417 (lpdA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
FAD_oxidored
Pyr_redox_3
GIDA
FAD_binding_2
HI0933_like
AlaDh_PNT_C
NAD_binding_8
Thi4
FAD_binding_3
DAO
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
CDG13982
LinkDB
All DBs
Position
complement(3629943..3631367)
Genome browser
AA seq
474 aa
AA seq
DB search
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVA
KVIEEAKALAEHGIVFGEPKTDIDKVRVWKEKVITQLTGGLAGMAKGRKVKVVNGLGKFT
GANTLVVEGENGPTTINFDNAIIAAGSRPIQLPFIPHEDPRVWDSTDALELKTVPERLLV
MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDVVKVFTKRISKQFNLMLETKVTA
VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKLLDAGKAGVEVDERGFINVDKQ
LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGMKHYFDPKVIPSIAYTEPEVAWV
GLTEKEAKEKGISYETSTFPWAASGRAIASDCADGMTKLIFDKETHRIIGGAIVGTNGGE
LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEIYEGSITDLPNPKAKKK
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgaaattaaaactcaggtcgtggtacttggggcgggcccggcaggttactct
gcagcctttcgttgcgctgacttaggtcttgaaaccgttctggttgaacgttattccact
ctgggcggggtttgcctgaacgtgggatgtatcccttccaaagcactgctgcacgttgcc
aaagtgatcgaagaagccaaagcgctggccgaacacggcatcgttttcggcgagccgaaa
accgacatcgacaaagtgcgcgtctggaaagaaaaagtcatcactcagctgaccggcggt
ctggctggcatggcgaaaggccgtaaagtgaaagtggtcaacggcttgggcaagttcacc
ggcgctaacaccctggttgtggaaggcgaaaacggcccaaccaccatcaacttcgacaac
gccatcatcgctgcaggttctcgtccgatccaactgccattcattcctcatgaagatcca
cgcgtgtgggattccaccgatgcgctggagctgaaaaccgtcccagagcgtctgctggtt
atgggcggcggcatcatcggcctggaaatgggcaccgtataccatgcactgggttcacag
atcgacgtcgttgaaatgttcgatcaggttatcccggcggcagataaagacgtggtgaaa
gtcttcaccaagcgtatcagcaagcagttcaacctgatgctggaaaccaaagtgaccgcg
gtagaagccaaagaagacggcatctacgtcacgatggaaggtaaaaaagcgccggcagaa
ccacagcgttacgacgcggtgctggtggcgatcggccgcgtgccgaacggcaaactgctg
gatgccggcaaagccggtgttgaagttgacgagcgtggcttcatcaacgtcgacaaacag
ctgcgcaccaacgtgccgcacatcttcgctatcggcgacatcgtcggtcagccgatgctg
gcgcacaaaggcgtgcacgaaggccacgttgccgcagaagttatcgccggcatgaagcac
tacttcgatccgaaagtgatcccatccatcgcttacaccgagccggaagtggcatgggtg
ggtctgaccgagaaagaagcgaaagagaaaggcatcagctacgaaacctccaccttcccg
tgggcggcttccggccgtgcgatcgcttccgactgtgcagacggcatgaccaaactgatc
ttcgacaaagaaactcaccgcatcatcggtggcgcgattgtcggcaccaacggcggtgaa
ctgctgggtgaaatcggtctggctatcgagatgggctgcgacgcggaagacatcgcgctg
accatccacgctcacccgaccctgcacgaatccgtgggcctggcggcggaaatctacgaa
ggcagcatcaccgacctgcctaacccgaaagccaagaagaagtaa
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