Sphingopyxis macrogoltabida 203: LH19_11415
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Entry
LH19_11415 CDS
T04627
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smaz
Sphingopyxis macrogoltabida 203
Pathway
smaz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LH19_11415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smaz03400
]
LH19_11415
Enzymes [BR:
smaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LH19_11415
DNA repair and recombination proteins [BR:
smaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LH19_11415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALJ13477
UniProt:
A0A0P0D2L7
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All DBs
Position
2238739..2240622
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AA seq
627 aa
AA seq
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MARKTAAPSPADRAPSSKRGERKAAAPPPFRPVQLATLVDSVPAGRGWVHEMKYDGYRLL
IAVGGDEARAYTRSGLDWSERFAPLLAEAAKLKVDSALIDGEAVVLDAEGRSSFQSLQNA
LKSAPDSIDYFAFDLLALDGEDLTALPLLDRKAHLAKILPKASRHIRYSDHIAGSGEALL
ESFCAAGLEGVISKKGDARYVGARAGSWLKTKCIKRQEFVIVGWTPSDTSRAFRSLMLGV
HEKGALRYAGKVGTGFDTEELFRLQAMMKPLERKEPTVKVPRTETRGAHWIEPKLVAEIA
FTEMTNDGTLRHPSYLGLREDKKPEAVVIESEAAVAEVAHASPVPISNPDRVIFPEAGLT
KGELAEYYAVVAPIMLPWAGSRPISLVRCPQGRAKKCFFQKHDAGSLGDAVKQVAIEEKD
GDNQPYLYMDTPEGLMTCVQMGTIEFHGWGARIEDVEKADRLVFDLDPDVGLDFEAVRSA
AFQFRDILKQMGLETFPMLTGGKGVHVIAPLVPRAEWPEVKDFAHRLARAVAQMDSDRFT
AALPKAQRKGRIFVDYLRNQRGATAVMPYSARAREGAPVAAPISWKEMETIDKPSHFRIT
DAKELLKRADLKALQGWGRADQTLPDL
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaagaccgccgcaccgagccctgcagaccgcgccccctcttcgaagcgcggc
gaacgaaaggctgcggctcccccgccctttcgtccggtccagctggcgacgctcgtcgac
agcgttcccgctggcaggggctgggttcacgagatgaaatatgacggctaccgcctgctg
atcgcggtcggcggcgacgaggcccgcgcctatacgcgctccggtctcgactggtcggag
cgcttcgcgccgctcctcgccgaggccgcaaagctgaaggtagacagcgcgctgatcgac
ggtgaagcggtcgtgctcgatgctgaaggccgctcaagcttccagtcactgcaaaatgcc
ctgaagtccgcgcccgatagcatcgactatttcgccttcgatctgctcgcgctggacggc
gaggatctgaccgccctccccctcctcgaccgcaaggcgcatcttgccaaaattcttccc
aaggcctccaggcatatccgctactcggatcatatcgcgggcagcggcgaggcattgctc
gagagtttctgcgctgcgggtctcgaaggggtcatctcgaaaaagggcgatgcgcgctat
gtcggcgcgcgcgcgggaagctggctcaagacgaagtgcatcaagcggcaggagttcgtc
atcgtcggctggacgccctcggacacgtcgcgcgcgttccgctcgctgatgcttggcgtc
catgagaagggcgcgctgcgctacgcgggcaaggtcgggaccggtttcgataccgaggag
ctcttccgcctccaggcgatgatgaagccgctcgaacgaaaggagccgacggtgaaggtg
ccccgcaccgagacgcgcggcgcgcactggatcgagccgaagctcgtcgccgagatcgcc
ttcaccgagatgacgaacgatggcacgctccgccacccgagctatctcggccttcgtgag
gacaagaagcccgaagcggtcgtgatcgaaagcgaagcggcggtcgccgaggtggcgcac
gcctcgccagtaccgatcagcaaccccgaccgcgtcatctttcccgaggcggggctcacc
aagggcgagcttgcagaatattatgccgtggtcgcgccgatcatgctgccgtgggcgggt
tcgcgcccgatcagcctcgtgcgctgtccgcagggccgcgccaagaaatgcttcttccag
aaacatgatgccggaagcctcggcgatgcggtgaaacaggtcgcgatcgaggagaaggat
ggcgacaaccagccctatctctatatggacacgcccgagggcctgatgacctgcgtccag
atgggcacgatcgaattccatggctggggcgcgcgcatcgaggatgtcgagaaggccgat
cggctcgtcttcgatctcgatcccgacgtcggtctcgatttcgaggcggtccgcagcgcc
gccttccagttccgcgacatcctgaagcagatgggcctcgagaccttcccgatgctcacc
ggcggcaaaggcgtccatgtgatcgccccgctcgtgccgcgcgccgaatggcccgaggtc
aaggacttcgcgcaccggctcgcccgcgccgtcgcccagatggattccgaccgcttcacc
gccgccctccccaaggcgcagcgcaagggccggatcttcgtcgattatctccgcaaccag
cgcggcgcgactgcggtgatgccctattcggcgcgggcccgcgaaggcgcgccggtcgcc
gcgcccatcagctggaaggaaatggagacgatcgacaagccttcgcatttccgcatcacc
gacgcgaaggagcttctgaagcgcgccgacctcaaggcgctgcaaggctggggccgcgcc
gaccagacgctgcccgacctgtga
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