Sinorhizobium medicae: Smed_1305
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Entry
Smed_1305 CDS
T00555
Name
(GenBank) DNA polymerase LigD ligase region
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Smed_1305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_1305
Enzymes [BR:
smd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Smed_1305
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Smed_1305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABR60155
UniProt:
A6U925
LinkDB
All DBs
Position
complement(1397752..1398783)
Genome browser
AA seq
343 aa
AA seq
DB search
MFYKPKESIRLFAGLCVNGLMAKASSKKPRDVAPMDPMPARVDPCLATLVDKPPIGPDWA
YEVKWDGYRLSVHIEPGRVRILTRGGYDWTERFPTIADDARRLAVKTAIFDGEAVVLDEQ
GRSDFGMLQRALGRLPSAVEAGAIVLYAFDLLYLDGRDLRRLPFGERRRLLEPLVAGREG
AVRLSEEVQADGDEFFRVACEHGLEGIIAKHIEKPYRSGRGEWWQKITCKRRDSFVIVGF
EPSTVPGHLGRLLLAARKDGELVYVGGCGTGWSHELSRELRNLLEGMATKIPAVALRRKG
AVFVEPVLVAEVEYRAWTDDGKLRHASFKGIREREDEAGVYSL
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgttctataagccgaaagagtcaattcggcttttcgcgggcctgtgcgttaatggcctg
atggccaaagcatcctcgaagaagcctcgcgatgtcgctccaatggatcccatgccggcg
cgcgtcgatccctgccttgccactctcgtggataagccgccaatcggccccgactgggcc
tatgaggtgaagtgggacgggtaccggctgtccgtgcacatcgagcctggccgggtgcga
atactcacgcgcggtggctacgactggaccgagcgcttcccaacaatcgcagacgacgcg
cggcgcctcgccgtgaaaacggcgatcttcgacggggaggcggttgttctcgacgagcag
gggcggtccgatttcggcatgctgcagcgggcgctcgggcgacttccttcggcggtcgaa
gccggcgccatcgtcttatatgcctttgacctcctctatcttgacggccgcgatcttcgc
cgtctgccgttcggagagcgccggcgattgcttgagccgctcgttgcaggtcgggaaggg
gccgtccgcctttctgaggaggttcaggctgatggcgacgagttctttcgcgttgcgtgc
gaacacggccttgagggcatcatcgccaagcacattgagaagccataccgctcaggtcga
ggcgagtggtggcagaagatcacctgcaagcgccgggatagctttgtgatcgtcggcttc
gagccgtcgacagtgccaggtcatctcgggcggcttctcctcgccgcgcgcaaggacggc
gagctcgtctatgtcggcggctgcggaactggctggtcacatgagctttcgcgtgagctg
cgtaatctgctcgaagggatggcgacaaaaatcccggcggttgcgctgcggaggaagggc
gccgtctttgtcgagccggtgctcgtcgcggaggttgagtatcgcgcctggacagacgac
ggaaagctaaggcatgcctcgttcaaggggatcagggagcgggaggatgaggcgggggtg
tatagtctgtga
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