Sinorhizobium meliloti 1021: SMc01929
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Entry
SMc01929 CDS
T00058
Name
(GenBank) Hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sme
Sinorhizobium meliloti 1021
Pathway
sme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMc01929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sme03019
]
SMc01929
Messenger RNA biogenesis [BR:
sme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMc01929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
CAC45860
RhizoBase:
SMc01929
UniProt:
Q92QN7
LinkDB
All DBs
Position
1394904..1396571
Genome browser
AA seq
555 aa
AA seq
DB search
MAQDEELVFLPLGGVGEIGMNLGLYGYGRPGHRQWIMVDCGVTFPGPELPGVDLVLPDIA
FLAEQRRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAFEKSRSEIP
ITIFKQGDRINVGPFSVEAVGVNHSIPEPMALVIRTQLGTVVHTGDWKIDLEPSLGPLTD
ESRFRQIGEEGVLALVCDSTNALREGVSPSERQVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVDVARDVGLMEGVKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIITD
SEALVHVSGHPRRTELQQMYQWVKPQILVPVHGEAAHLTAHAELGLQSGIPSVPRLRNGE
MLRLAPGPAEVIDEAPHGRIYKDGTLIGDFEEMGIGERRKLSFAGHVSVSVVLDSRYDFL
GDPDVVPIGLPEFDDEGEAMEDTLYDAVLGAVESIPRAKRKDLAMLQEAVRRAVRSTTNQ
VWGKKPVVTVFITKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggatgaagaactggtgttcttgccgctcggcggcgtcggcgaaataggcatg
aatctcggcctttacggttatggaaggccaggccaccgccaatggatcatggtcgattgc
ggcgtgaccttccccggcccggaattgcccggcgtagatctggttctgcccgatatcgcc
tttctggccgaacagcgccgcaacctgaaggcgatcatcatcacgcatgcgcatgaggac
cattacggggctctgaacgatctgtggccgggcctgaacgttcccgtctacgcctcgccc
tttaccgcgggcatgctggaggccaagcgcgcattcgaaaagtcccgcagtgagatcccg
atcacgatcttcaagcagggcgaccgcatcaatgtcgggcctttcagcgtcgaagccgtg
ggggtcaatcattcgatccccgagccgatggcgctcgtcatccgtacgcaactcggcacc
gtcgtgcacacgggcgactggaagatcgatctcgagccttcgctggggcccctgaccgac
gagtcgcggtttcgccagatcggggaggaaggcgtcctcgcgctcgtctgcgattcgacc
aatgccttgcgcgaaggcgtgtcgccgtccgaacggcaagtctccgaaagtctcgccaag
atcattgccgatgccgagggccgcgtcgggatcaccaccttctcctccaatgtcgggcgc
atccgctctgttgcggaagcggcggaggctgcggggcgggaggtgcttctactcggcagt
tcgatgaagcgcgtcgtcgacgttgcgcgcgatgtcgggctcatggaaggcgtgaagccg
ttcctcgcagaggacgagttcggctacatcccgcgcgacaaggtcgtggtcatcctgacg
ggcagccagggcgagccgcgcgcggcccttgccaagatcgctcgcgacgagatgcgcaac
gtggcgttttcggccggcgacacgatcgtattttcgtcgcgcaccatccccggcaacgaa
aaagcgatcaacgacatcaagaacgggcttatcgagcaaggcatccacatcatcacggat
agcgaggcgctggtgcatgtttccggccatccgcggcgcaccgagctccagcagatgtac
caatgggtgaagccgcagatcctcgtgccggtgcatggcgaggcggcgcatctgacggca
catgcggagctcgggctgcaatcgggcatcccgagcgtgccgcggctgcgcaatggcgaa
atgctacgacttgcgccgggccccgcggaagtcatcgacgaggcgccgcacggccgcatc
tacaaggacggcaccctcatcggcgatttcgaagagatggggataggcgaacgccgcaag
ctttcctttgccggccacgtctccgtcagtgtcgtactcgacagccgctacgactttctg
ggtgacccggacgtcgtgccgatcggccttccggaattcgacgacgaaggcgaggcgatg
gaggacacgctctatgatgcggtgctcggcgccgtggaaagcatcccgcgggcaaagcgg
aaggacctcgcgatgctgcaggaagccgttcgccgcgccgtgcgcagcaccacgaaccag
gtctggggcaagaagccggtcgtgacggtttttatcacgaaggtctga
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