Sinorhizobium meliloti 1021: SMc03959
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Entry
SMc03959 CDS
T00058
Name
(GenBank) Probable ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sme
Sinorhizobium meliloti 1021
Pathway
sme03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SMc03959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sme03400
]
SMc03959
Enzymes [BR:
sme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SMc03959
DNA repair and recombination proteins [BR:
sme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SMc03959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAC47322
RhizoBase:
SMc03959
UniProt:
Q92M95
LinkDB
All DBs
Position
2951627..2954224
Genome browser
AA seq
865 aa
AA seq
DB search
MAARNEPLSEYNRRRDFTRTSEPKGAVARRSGDNRMRFLVQKHAATRLHYDFRLEWEGVL
KSWAVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDP
SKALKKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDDVASDDGESLINENI
TSIVTGRTMEEIAEGRGEKRARVWHSNKSISANLKAGAIAENGNAGKRATRKASGKLPAF
KAPQLATLVTKVPAGDAWLNEAKFDGYRLVCAVGAGTVRCYTRNGLDWTEKFPAIAAALA
ELDCQSALIDGEVVALSEGGSTFSALQKALRTGASTRLYAFDLIELDGKDLSRKPLVERK
ERLEALLQTLGATSTVQFSEHVRGNGEHVLSAICKAGQEGIIAKEADAPYRSGRSRSWLK
VKCTKRQEFVIGGYTPSSKKGRAFASLLVGTFEGGKLIYRGGVGTGFSGKTMEDLAAAFA
KRKRDTSPFDSVPRERMRNSVWLEPDLVAEVDFAEFTADGHVRHGSFEGLREDKEARAVK
LETPKPAEAEPETAKSKSSARTRKTPPVQGDADVLGIRISHPDRVLFEGQGITKIDLARY
YAVVAERMLPFAADHPVSLVRCPQGGERHCFFQKHASDGFPEAIREVPITESSGDTENYM
YIHDAKGLVAAVQMGTLEFHIWGSSIDRLEKPDRLVFDLDPDPSVDFETVKAAALRLRDE
LAEIGLKTVPMVTGGKGVHVIVPLRPHAEWEEAKGFAKALARSIAERDPDNFVATMSKAK
RKGKIFIDWLRNDRGATAIAPYSTRARSGGPVATPVGWDELQGLEAANGFQIPDIIERIE
AGTDPWREIGKISQSLTKKILNSVE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcgcaatgaaccgctttccgaatataaccggcgccgcgatttcacgcggacg
agcgaacccaagggagcggtcgctcggcgcagcggggacaacaggatgcggttcctggtt
cagaagcacgctgcgacccgcctgcattacgacttccgcctggaatgggagggcgtgctg
aagagctgggcggtcacacgcggcccgagcctcaaccccgaagacaagcgcctggccgtg
cgtaccgaagaccacccgcttgcctatggcgacttcgaaggaacgataccgaagggagag
tatggcggcggtaccgtgatgctctgggataccggctggtgggagccggaggatgacccg
tcgaaagccctgaagaagggcaagctctccttcaagctgcatggcagccgaatgaagggc
ggctgggcgctggtgcgcatgcggccacgcgaaggcgaaaagcgcgagaactggctgctc
gtcaaggaaacggacgatgtcgcctccgatgacggcgagagcctgatcaacgagaacatc
accagcatcgttaccggccggacgatggaggagatcgccgaaggcaggggcgagaagcgg
gcgcgggtctggcattccaacaaaagcatctcggccaatctcaaggccggcgcgatcgcc
gaaaacggcaatgcaggcaagcgcgcgacgcgaaaagcctccggcaagctgcccgccttc
aaggcaccgcagctggcgactctggtgaccaaggtgcccgccggcgacgcatggctgaac
gaagccaagttcgacggctaccgtcttgtctgcgccgtcggtgccggcaccgtgcgctgc
tacacgcgcaacggcctcgactggaccgagaagttcccggcaattgccgccgcccttgcc
gaactcgactgccagtccgctctgatcgatggcgaagtggtggcgctttcggaaggcgga
tcgaccttctcggccctgcagaaggcgcttagaacgggggccagcacacggctttacgct
ttcgatctcatcgagctcgacggcaaggatctgagccggaagccgctcgtggaacgcaag
gaacggctcgaagcgctgctccaaacgctcggcgccacctctaccgtacaattcagcgag
catgtccgcggcaatggcgagcacgtgctttccgcgatatgcaaggccggccaggagggt
ataatcgccaaggaggccgatgccccctatcgcagcgggcgcagccgaagctggctcaag
gtgaaatgcacgaagcgccaggagttcgtgatcggtggctataccccgtcttcaaagaag
gggcgtgccttcgcctcgctgctcgtcgggaccttcgaaggcgggaagctgatctaccgt
ggcggcgtcggcaccggtttcagcggaaagacaatggaggacctcgccgcggccttcgca
aagcgcaagcgcgatacgtcgcccttcgacagcgtgccgcgagagagaatgcgaaattcg
gtatggcttgagccggacctggtggcggaggtggatttcgccgaattcacggccgacgga
catgtccgtcacggttcattcgagggattgcgcgaggacaaggaggccagggccgtgaaa
ctggagacaccgaagccggcagaagcggagccggagaccgccaagagcaaatcttccgcc
aggacgcgcaagacgccgcctgtgcagggagacgccgatgtcctcggcatccgcatctcc
catccggaccgggtgctcttcgaaggccagggcatcaccaagatcgatctcgcccgctat
tacgccgttgtcgccgagaggatgctcccctttgccgccgatcaccccgtttcgctggtg
cgctgcccgcagggcggcgagcggcactgtttcttccagaaacacgcaagcgacggcttt
cccgaggcgatccgggaagtgccgattaccgagtcatcgggcgacaccgagaactatatg
tacatccacgatgccaagggcctcgtcgccgccgtgcagatggggacgctcgagtttcac
atctggggttcaagcatcgaccggctggagaaacccgaccgtctggtcttcgatctcgac
cccgatccgagcgtcgacttcgagacagtcaaggcggcagccctcaggctccgcgacgaa
ctcgccgagatcggcctgaaaacagtgcccatggtgaccggcggcaagggcgtccacgtc
atcgttccgctccgcccccatgccgaatgggaggaggccaaaggcttcgcgaaagcgctc
gcgcgatctatcgccgagcgcgatccggacaatttcgtcgccaccatgtcgaaggcgaag
cgcaagggaaagattttcatagactggctgagaaacgatcgcggcgccacggcgatcgcg
ccctattccacccgcgcgcgctccggcggaccggtcgccacaccggtcggctgggacgaa
ctccaaggcctcgaagccgccaacgggtttcagattccggacattatcgagcggatcgaa
gccgggaccgatccgtggcgggagatcggcaagatcagtcagtcgctgacgaagaagata
ttgaactcggtcgaatga
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