Silurus meridionalis (southern catfish): 124375568 Help Entry 124375568         CDS       T08004                                  Symbol pcdh15a Name (RefSeq) protocadherin-15a isoform X1   KO K16500   protocadherin-15 Organism smeo  Silurus meridionalis (southern catfish) Brite KEGG Orthology (KO) [BR:smeo00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:smeo03037]     124375568 (pcdh15a)    04515 Cell adhesion molecules [BR:smeo04515]     124375568 (pcdh15a) Cilium and associated proteins [BR:smeo03037]  Primary cilia and associated proteins   USH complex and associated proteins    124375568 (pcdh15a) Cell adhesion molecules [BR:smeo04515]  Cadherins   Protocadherins    124375568 (pcdh15a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin ECD Cadherin_3 Cadherin_2 Cadherin_4 Motif Other DBs NCBI-GeneID:  124375568 NCBI-ProteinID:  XP_046689998 LinkDB All DBs Position 2:complement(18363872..18563999) Genome browser AA seq 1742 aa AA seqDB search MRRVLWLVRWFGIGIVLLKPIPHIMAQGTEDWHYDECKLYRAGPPATIVTIDEESPNGTV LVETMQINGRAQDPGQTISLTLLGNYDYWVILDPILQRLYLNSTGRILDRDPPRSITTIV VQVQCTNELVGTIILHEVRILVRDRNDNVPQFQQPRYYIAVNELTPVGTTIFTGFSGNNG ATDIDDGPNGQIEYGIQYNPNDPMSNRTVQVASTLSGNIVLAERLNYEERTRYLIIVQAN DRAPFPSSRHTATTTLTLDVLDGDDLGPMFLPCVLVNNTRDCSPVTYHAVIPELIDPSKL NPLNVSPPIRAVDQDRNIQPPSDRPGILYFILVGQPAVYPEFFSLNKTTAELRLLKPVRR DLYQSFNLVIKAEQDNGHPLPAFADLQIEVLDENNQAPYFQQPSYQGFISESAPVGGTVA GRANLTAPLAIIALDNDIEESKDPQVKITMSDYNTVFSITSTGITRYLLLLRPVDREIQT NYTFTMVASDGVQQSAPVMVNILVIDANDNTPTFSQVSYNIEVFTNMQPGETVIQLTAQD TDEGLNGLVTYTILVGDQGHFVISNRTGRITIAPGVSLSVGRSYALTVRAADNAPEAERR SSITTVYIEVLPPNNQSPPRFPLTTYNLEISEAMRIGAILLNLQAIDRELDPITYRILSG DPQQTFNLSQTIGLLILAKALDRETTDQYRLIVTASDGHPGGTSTATVSIVVTDVNDNDP TFDLSLPRNLTVQEERANLTVGQVRATDPDAGPNGQVHYRLLTHASLFSINANGSIFTAV PLDREVQSQYEVVVEALDGAVDPRRTSLTLLVQMLDINDNSPVFSQPFYHVNVPENTPAR TVILHLNATDEDLISNITYRIRTEEARQLFAVDRVTGALSVLQSLDFEALGQNGANYTFQ VEALDYEGVLPPGIATVTVRITDVNDFTPVFVRPFYKGMVAPNAEKGTLITTVLATDQDP PGTPASRVRYRVDQEQSPYSGSIFDVEDTSGRVITKVNLNEEPSTTFRLIVTAFDEGDPV KMNTTLVEITVLQPSRIPIFTEEEYWFSPVSENAPIGRAVGMVLAAAANTTVFYSIVGGN EGGEFRVDNRTGMIYTAKLLDYETRTSYELRLQADSLALVLANLRVPSKTNTARVFINVQ DENDHPPVFTESLYIGGVTEDTKTFTSVLKVIATDIDTGNYSKMTYRLIIPPTPEGQDSF VIEQYTGIIKSAIMYRNMRRSYFKFEVIATDDYGKGLSSSAEVVVSVVNALDMQVVVSNV PPTVVEENKEQLVRILERYVQDQIPGAKVIVESIGPRRHGEGYSLEDYSKSDLQVYAIDP LTNRAISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVATVKKAAQAVGYTEG ALLALAIIIILCCIPAILIIMVTYKQFKEKQAECAKTARIQKSLAATKSAAGPVPVSASA SAPSNLYEELGDGKMRGYGREQQQLLRPSLLRPEVESICSSGTALSMESGIDPGQDYYTQ DYYSYDQGYDPYAPYGSRRRLISPMYDEYGEAIMDDDGYYYSAYGQEALRKKQMKLNVEK EGESTTTGEDSGPDIQRNRLPNVNCQSNVNGMVYLAQNGTIIRTRRPPYPNNIKQFSPGR LGKHFKKLEKLGVTEEEHLPLNSTVDNGPTIGTTGTLSSTTNSILDTRPITWSIGSSMGP KSDHIKTHLDHEQGSCQQEQESRVDNEVVKETLESPSDHTLSEEEELWMGPWNNLHIPMT KL NT seq 5229 nt NT seq  +upstreamnt  +downstreamnt atgaggagggtcttgtggctagtgaggtggtttgggattgggattgtcctgcttaagccc atccctcacatcatggctcagggtacagaagactggcattatgatgagtgtaagttatat cgagctggacctcctgccaccatcgtcaccattgatgaagagagtccaaatggtacagtt ctggtggagactatgcagattaatggtcgagcacaggacccaggccagaccatatctctt actttactggggaactatgactactgggttatactggaccctatccttcagagactctac ctcaacagtactggaagaatactggaccgagatcctccaagatccatcactactatagtg gttcaggttcagtgcactaatgagctggtgggcacaattattctgcatgaggtgcgcatt ttggtacgcgacaggaacgacaacgtaccgcagtttcaacagcctcgctattacatagca gtcaatgagctcactcctgttggcaccaccatcttcactggtttctcaggaaacaacgga gccactgacattgatgatggaccaaatggccaaattgaatacggcatccagtacaatccg aatgacccgatgtcaaacaggactgtacaggtggccagcacattgtctggtaacattgtt cttgctgagagattaaactatgaagaaagaacacgctacctaatcatagtccaggctaat gatcgtgctccatttccatccagccggcacactgctactacaacgctgacgctagatgtt ctagacggagatgacctgggtcccatgttcctgccctgcgttctggtcaataacacacga gactgcagccctgtcacataccatgccgtcattcctgaactcatagacccgagtaaactg aatcccctaaacgtgtcaccacctatccgagcagtggatcaggacaggaatattcagcct ccatcagaccgacccggcattctctactttatactggttggacagccagcggtctaccca gagttcttttctttgaacaagaccacagccgagctccgccttctaaagccagttaggaga gacctctaccaaagtttcaatcttgtcatcaaggccgagcaggataacggccaccctttg cctgcgttcgccgacttgcagattgaggtgttagacgaaaacaaccaggcaccgtacttc cagcagccatcctaccaaggcttcatcagtgagtcggcccctgtgggtggcaccgtggca ggcagagccaacctcacagcaccgctggccatcattgcccttgataatgacatagaggag agtaaagacccacaggtgaagatcacaatgagtgactacaacaccgttttctccatcacc tctacaggaatcacacgttacctcttgctgctcagacctgtggacagagagatacagacg aactacaccttcacaatggtggcctctgacggtgtacagcagagtgcgcctgtaatggtg aacatcctggttattgatgctaatgacaacacacccacattctctcaggtctcctacaac atagaggtgttcactaacatgcagcctggagagactgtaatacagctaactgctcaggat actgatgagggtctgaacggtttggtgacctacacaatcttggtaggagatcagggacat tttgtcatcagtaaccgtacaggtcgaatcaccatagctccaggagtgagtctgagcgtg ggccgatcctacgctctaactgtcagagcagctgataacgcacctgaggctgagaggagg agttccataactacggtttatattgaggttctaccccctaacaaccagagtcctccacgc tttcctctgacaacctacaacctagagatcagtgaagccatgcgaataggagccatcctc cttaatctgcaggcgatagaccgtgaacttgatccaattacgtaccgtattctgagtggc gatccgcagcagacgttcaatctttctcaaactataggcctactaatcttagccaaggca ttggacagagagaccactgatcaataccggctcattgtaacggcctctgatggacatcct ggagggacgtccactgctactgtcagcattgtggtcacggacgtcaatgacaatgaccca acttttgacctcagtttgcctaggaatctgactgtacaagaggagagggctaatttgact gtgggtcaagttcgagccacagatccagatgctgggccgaatggtcaggtgcactatcgg ctcctcacccacgcatctctcttcagcattaatgccaatggcagcatattcaccgctgtg cctctggaccgggaagttcagagtcagtatgaggtggtggtggaggccttggacggagca gtagaccctcggcgcacatccctcactttgctggtgcaaatgttagacatcaacgataac agccctgtcttctcgcagccattttaccatgtcaacgtaccagagaacactccggccaga accgtcatcctgcaccttaatgctacagatgaagatctgatctctaatataacatatagg ataaggacagaggaagcacggcagctttttgcagtggacagggtcactggagctctgtca gtgctgcagtctttggactttgaggctctgggtcaaaatggtgctaactacacattccag gtagaggcgctggattatgaaggtgtcctgccccccggaatagctacagttacagtaaga attacggatgtgaatgattttacaccggtcttcgttcggcctttttataaaggcatggtg gctcctaatgctgagaagggaacgttgatcacaactgtacttgcaactgatcaagaccct cctgggacaccagcaagcagggtgcggtacagagtggaccaggaacagtctccctacagc ggcagcatctttgatgtagaggatacctcaggcagagtcatcactaaagtgaacttgaac gaggaaccaagtactacttttcgactgatagtgactgcttttgatgagggtgatccagtg aaaatgaatacaacgctagtggaaatcaccgtcctgcagccctccagaatacccattttc acagaggaggagtactggttcagcccggtgagtgagaacgctccgatcggcagggctgta ggaatggttcttgcggcggctgcaaacaccaccgtgttctactccattgtggggggcaat gaggggggtgagtttcgagtggataaccgcactggaatgatttacacggcgaagctactc gactacgagacgcgcaccagctatgagctccgtctgcaggctgactctctggcccttgtt ctggccaacctgcgtgtgccttccaaaacgaacacagccagggtgtttatcaacgtgcag gatgagaacgatcatcctccagtgtttacagagtccctgtacattggcggagtaactgaa gacactaagacctttacgtcggttctgaaggttattgctacagatatagacactgggaac tacagtaagatgacttacaggctaatcatccccccaactcctgagggtcaggacagcttt gtcatcgagcaatacaccggcatcatcaaaagtgccatcatgtatcgaaacatgcggcgt tcttacttcaaattcgaggtcattgccactgatgattatgggaaaggtctgagcagcagt gctgaggtggtggtgtcagtggtgaatgcgttggacatgcaggtagttgtgtccaatgtg ccgcctacagtagtggaagagaacaaagagcaacttgtcagaattctcgagcgttatgtg caggaccaaatccctggagctaaagtgatagtggaatccatcggaccacggcggcatggg gaaggatattcattagaggactacagcaaatcagacctgcaggtgtacgcgatcgaccct ctcacaaacagggctatatctcgacaagagcttttcaagtttctggatggtaagattctg gacattaataaagagtttcagccatacctgggtgaaggcgggaggattttggaaatccgc tctccagacattgtggccactgtgaagaaagctgctcaggctgtgggctacacagagggt gcactactcgcccttgccatcatcatcatcctctgctgcatccctgccattctcatcatc atggtcacatacaaacaattcaaagagaaacaggcagagtgtgccaaaaccgcccgtatc cagaagtcacttgctgctacaaaatcagctgctggtccagttcctgtttcagcttcagct tcagctccatctaatctctatgaggaactcggagatggcaaaatgcgtggatatggcaga gagcaacaacagctgctgaggccgtctttgcttaggccagaggtagagtccatatgttcc tccggcactgcactctctatggaatcgggtattgaccctgggcaagactactatacacaa gactattacagctatgatcaagggtatgatccgtatgctccttatggcagccgcaggagg ttgatatctcccatgtacgatgagtacggagaagccataatggacgatgatggctactac tacagtgcatatggccaagaggctctcagaaagaagcagatgaagttaaatgtggagaaa gagggcgagtcaaccactactggagaggacagtggcccagacatccagaggaaccggctg cctaatgttaactgtcaaagtaatgtaaatggtatggtgtacctggcacagaatggtacg atcataagaacccgacggccaccttaccccaataacataaaacaattttcacccgggcga ctaggaaaacacttcaagaaactggaaaagttaggagtcacagaggaggaacatttgcct ttaaatagcacagtggataacggacctactataggaaccactggcacactttcatctact actaacagcatccttgacaccaggcccataacctggtccatagggtctagtatggggcca aagtccgaccacattaaaacgcatttggaccatgagcaggggagctgtcagcaggaacag gagtctagggtggacaatgaggtggtcaaagagaccttggagtctccaagtgaccacaca ctgtcagaagaggaggagttgtggatgggcccctggaacaatcttcatataccaatgaca aaactctga

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